2005 Vol. 24, No. 2
column
Display Method:
2005, (2): 1-8.
Abstract:
The four leading tidal constituents M2, S2, K1 and O1 in the South China Sea are simulated by using POM. The model is forced with tide-generating potential and four leading tidal constituents at the open boundary. In order to simulate more exactly, TOPEX/Poseidon altimeter data are assimilated into the model and the open boundary is optimized. The computed co-tidal charts for M2 and K1 constituents are generally consistent with previous results in this region. The numerical simulation shows that energetic internal tides are generated over the bottom topography such as the Dongsha Islands, the Xisha Islands, the Zhongsha Islands, the Nansha Islands and the Luzon Strait.
The four leading tidal constituents M2, S2, K1 and O1 in the South China Sea are simulated by using POM. The model is forced with tide-generating potential and four leading tidal constituents at the open boundary. In order to simulate more exactly, TOPEX/Poseidon altimeter data are assimilated into the model and the open boundary is optimized. The computed co-tidal charts for M2 and K1 constituents are generally consistent with previous results in this region. The numerical simulation shows that energetic internal tides are generated over the bottom topography such as the Dongsha Islands, the Xisha Islands, the Zhongsha Islands, the Nansha Islands and the Luzon Strait.
2005, (2): 9-15.
Abstract:
The antarctic sea ice was investigated upon five occasions between January 4 and February 15, 2003. The investigations included:(1)estimation of sea ice distribution by ship-based observations between the middle Weddell Sea and the Prydz Bay; (2) estimation of sea ice distribution by aerial photography in the Prydz Bay; (3) direct measurements of fast ice thickness and snow cover, as well as ice core sampling in Nella Fjord; (4) estimation of melting sea ice distribution near the Zhongshan Station; and (5) observation of sea ice early freeze near the Zhongshan Station. On average, sea ice covered 14.4% of the study area. The highest sea ice concentration (80%)was observed in the Weddell Sea. First-year ice was dominant (99.7%~99.8%). Sea ice distributions in the Prydz Bay were more variable due to complex inshore topography, proximity of the Larsemann Hills, and/or grounded icebergs. The average thickness of landfast ice in Nella Fjord was 169.5 cm. Wind-blown snow redistribution plays an important role in affecting the ice thickness in Nella Fjord. Preliminary freezing of sea ice near the Zhongshan Station follows the first two phases of the pancake cycle.
The antarctic sea ice was investigated upon five occasions between January 4 and February 15, 2003. The investigations included:(1)estimation of sea ice distribution by ship-based observations between the middle Weddell Sea and the Prydz Bay; (2) estimation of sea ice distribution by aerial photography in the Prydz Bay; (3) direct measurements of fast ice thickness and snow cover, as well as ice core sampling in Nella Fjord; (4) estimation of melting sea ice distribution near the Zhongshan Station; and (5) observation of sea ice early freeze near the Zhongshan Station. On average, sea ice covered 14.4% of the study area. The highest sea ice concentration (80%)was observed in the Weddell Sea. First-year ice was dominant (99.7%~99.8%). Sea ice distributions in the Prydz Bay were more variable due to complex inshore topography, proximity of the Larsemann Hills, and/or grounded icebergs. The average thickness of landfast ice in Nella Fjord was 169.5 cm. Wind-blown snow redistribution plays an important role in affecting the ice thickness in Nella Fjord. Preliminary freezing of sea ice near the Zhongshan Station follows the first two phases of the pancake cycle.
2005, (2): 16-27.
Abstract:
A Nortek acoustic Doppler current profiler (NDP) was installed on a moving vessel to survey the entrance to the Jinhae Bay on August 22~23, 2001. The current velocity and acoustic backscattering signal were collected along two cross-sections; water samples were also collected during the measurement. The acoustic signals were normalized to compensate for the loss incurred by acoustic beam spreading in the seawater. The in situ calibration shows that a significant relationship is present between suspended sediment concentrations (SSC) and normalized acoustic signals. Two acoustic parameters have been determined to construct an acoustic-concentration model.Using this derived model, the SSC patterns along the surveyed cross-sections were obtained by the conversion of acoustic data. Using the current velocity and SSC data, the flux of suspended sediment was estimated. It indicates that the sediment transport into the bay through the entrance has an order of magnitude of 100 t per tidal cycle.
A Nortek acoustic Doppler current profiler (NDP) was installed on a moving vessel to survey the entrance to the Jinhae Bay on August 22~23, 2001. The current velocity and acoustic backscattering signal were collected along two cross-sections; water samples were also collected during the measurement. The acoustic signals were normalized to compensate for the loss incurred by acoustic beam spreading in the seawater. The in situ calibration shows that a significant relationship is present between suspended sediment concentrations (SSC) and normalized acoustic signals. Two acoustic parameters have been determined to construct an acoustic-concentration model.Using this derived model, the SSC patterns along the surveyed cross-sections were obtained by the conversion of acoustic data. Using the current velocity and SSC data, the flux of suspended sediment was estimated. It indicates that the sediment transport into the bay through the entrance has an order of magnitude of 100 t per tidal cycle.
2005, (2): 28-42.
Abstract:
Many growth faults developed in the Dongying sag of the Jiyang depression of the Bohai Gulf basin, China. These normal growth faults consist of flower-like grabens in the hanging walls of the major faults, accompanied by reverse dragging. The central structural belt is an important structural unit in the Dongying sag, and is divided into a series of small blocks by these faults. These internal blocks can be classified into five structural classes, including parallel blocks, arc-shape blocks, plume-like blocks, ring-radial blocks,and splay blocks. It is shown that these complicated block classes and the "negative flower-like" fault associations in the central structural belt resulted from regional NNW-SSE extension accompanying local salt diapirism and related reverse dragging, rather than strike-slip faulting. On the basis of the diapirism strength, diapers in the central structural belt can be divided into lower salt ridges and pillows, and blind piercing structures. Diapirs are mainly composed of some salts with a little soft mudstone and gypsum. These structures began forming during deposition of the Sha 3 member and terminated during deposition of the Guangtao formation.
Many growth faults developed in the Dongying sag of the Jiyang depression of the Bohai Gulf basin, China. These normal growth faults consist of flower-like grabens in the hanging walls of the major faults, accompanied by reverse dragging. The central structural belt is an important structural unit in the Dongying sag, and is divided into a series of small blocks by these faults. These internal blocks can be classified into five structural classes, including parallel blocks, arc-shape blocks, plume-like blocks, ring-radial blocks,and splay blocks. It is shown that these complicated block classes and the "negative flower-like" fault associations in the central structural belt resulted from regional NNW-SSE extension accompanying local salt diapirism and related reverse dragging, rather than strike-slip faulting. On the basis of the diapirism strength, diapers in the central structural belt can be divided into lower salt ridges and pillows, and blind piercing structures. Diapirs are mainly composed of some salts with a little soft mudstone and gypsum. These structures began forming during deposition of the Sha 3 member and terminated during deposition of the Guangtao formation.
2005, (2): 43-56.
Abstract:
On the basis of the bathymetric records of 371 survey sections in the present Huanghe mouth area from 1996 to 2001, the temporal and spatial variations of the Huanghe mouth bars were studied by using GIS technology. The variation of the mouth bars is closely related to the water and sediment discharges from the Huanghe River to the sea that has been decreasing drastically in recent years, and to coastal hydrodynamic regimes. The characteristics of the mouth bars are unique in contrast with those of other estuaries in the world (1) The mouth bars of the Huanghe River consist of many small sandbars. Usually the sandbars are of ellipse-shape with the long axis of about 1~6 km, and short axis of about 1~4 km. The long axis is parallel to the principal direction of tidal current, and the short axis is variable, depending on the local dynamics. The crest of the sandbars is only about 0.4 m below the water surface at low tide. They are distributed within an area of 20 km2, not far from the river mouth area. The present mouth bars are in small-medium size, quite different from the large one formed during the 1970s and 1980s, when the river sediment discharge was several times larger than that after 1996. (2) The scale of a river mouth bar is related to the river discharge of that year. In 1997 sediment discharge from the Huanghe River was 42 Mt, and the mouth bar consisted of several small scattered sandbars. In 1998 the size of mouth bars was much larger thar that in 1997, as the sediment discharge from the Huanghe River increased to 363 Mt. Variation of the mouth bars largely depends on the sediment discharge with a correlation coefficient of 0.78. The calculation of the volume of the mouth bar area shows that about 30%~40% of the river's into-sea sediment is deposited in the mouth bar area. (3) Compared with other large estuaries in the world, the Huanghe mouth bars have three unique features in responding to its high sediment concentration:small size, steep slope gradient and shallow crest depth.
On the basis of the bathymetric records of 371 survey sections in the present Huanghe mouth area from 1996 to 2001, the temporal and spatial variations of the Huanghe mouth bars were studied by using GIS technology. The variation of the mouth bars is closely related to the water and sediment discharges from the Huanghe River to the sea that has been decreasing drastically in recent years, and to coastal hydrodynamic regimes. The characteristics of the mouth bars are unique in contrast with those of other estuaries in the world (1) The mouth bars of the Huanghe River consist of many small sandbars. Usually the sandbars are of ellipse-shape with the long axis of about 1~6 km, and short axis of about 1~4 km. The long axis is parallel to the principal direction of tidal current, and the short axis is variable, depending on the local dynamics. The crest of the sandbars is only about 0.4 m below the water surface at low tide. They are distributed within an area of 20 km2, not far from the river mouth area. The present mouth bars are in small-medium size, quite different from the large one formed during the 1970s and 1980s, when the river sediment discharge was several times larger than that after 1996. (2) The scale of a river mouth bar is related to the river discharge of that year. In 1997 sediment discharge from the Huanghe River was 42 Mt, and the mouth bar consisted of several small scattered sandbars. In 1998 the size of mouth bars was much larger thar that in 1997, as the sediment discharge from the Huanghe River increased to 363 Mt. Variation of the mouth bars largely depends on the sediment discharge with a correlation coefficient of 0.78. The calculation of the volume of the mouth bar area shows that about 30%~40% of the river's into-sea sediment is deposited in the mouth bar area. (3) Compared with other large estuaries in the world, the Huanghe mouth bars have three unique features in responding to its high sediment concentration:small size, steep slope gradient and shallow crest depth.
2005, (2): 57-76.
Abstract:
The investigation on community structure of standing stock of photosynthetic picoplankton:Synechococcus (Syn), Prochlorococcus (Pro) and Picoeukaryotes (Euk) and their environmental regulation mechanisms in the northern South China Sea was carried out in the summer of 1999. The results showed that the average abundances of Syn, Pro and Euk in the study sea areas were (5.0±7.6)×104cell/cm3 (51%), (4.6±4.2)×104 cell/cm3 (47%) and (1.8±1.1)×103 cell/cm3 (2%) respectively, and those of their carbon biomass were (12.5±18.9) μg/dm3 (74%), (2.7±2.5) μg/dm3 (16%) and (1.7±1.0) μg/dm3 (10%). The most of high values of Syn appeared in the estuaries, coastal zone and continental shelf in the sea area to the east of Leizhou Peninsula and Hainan Island where nutrients were rich, and those appeared in the Beibu Gulfwere the second, while those appeared in continental slope and open sea were tens times lower than the above those. Its distribution in water column was mainly above the thermocline and its abundance below it sharply decreased. Two different populations of Pro were found, the surface population and deep one. The distribution pattern of the former was similar to that of Syn; while with marked difference from that of the former, the abundance and biomass of the latter markedly increased towards outer sea, continental slope and open sea where nutrients were poor; the high values in the water column mainly appeared at the bottom of euphoric zone and above the nitrocline, where it often vigorously grow. The distribution difference of Euk in the various sea areas is not as obvious as those of Syn and Pro, but it was high in coastal and shelf waters and low in continental slope and open sea. The high values in the water column were mostly appeared at the bottom of euphoric zone. This difference of distribution pattern for the three type of photosynthetic picoplankton depends on environmental effects and their ecophysiological differences.
The investigation on community structure of standing stock of photosynthetic picoplankton:Synechococcus (Syn), Prochlorococcus (Pro) and Picoeukaryotes (Euk) and their environmental regulation mechanisms in the northern South China Sea was carried out in the summer of 1999. The results showed that the average abundances of Syn, Pro and Euk in the study sea areas were (5.0±7.6)×104cell/cm3 (51%), (4.6±4.2)×104 cell/cm3 (47%) and (1.8±1.1)×103 cell/cm3 (2%) respectively, and those of their carbon biomass were (12.5±18.9) μg/dm3 (74%), (2.7±2.5) μg/dm3 (16%) and (1.7±1.0) μg/dm3 (10%). The most of high values of Syn appeared in the estuaries, coastal zone and continental shelf in the sea area to the east of Leizhou Peninsula and Hainan Island where nutrients were rich, and those appeared in the Beibu Gulfwere the second, while those appeared in continental slope and open sea were tens times lower than the above those. Its distribution in water column was mainly above the thermocline and its abundance below it sharply decreased. Two different populations of Pro were found, the surface population and deep one. The distribution pattern of the former was similar to that of Syn; while with marked difference from that of the former, the abundance and biomass of the latter markedly increased towards outer sea, continental slope and open sea where nutrients were poor; the high values in the water column mainly appeared at the bottom of euphoric zone and above the nitrocline, where it often vigorously grow. The distribution difference of Euk in the various sea areas is not as obvious as those of Syn and Pro, but it was high in coastal and shelf waters and low in continental slope and open sea. The high values in the water column were mostly appeared at the bottom of euphoric zone. This difference of distribution pattern for the three type of photosynthetic picoplankton depends on environmental effects and their ecophysiological differences.
2005, (2): 77-84.
Abstract:
The responses of the interspecific competition between Skeletonema costatum and Heterosigma akashiwo to UV-B radiation enhancement were studied by the co-culture method. The results showed that Heterosigma akashiwo exhibited inhibition on the growth of Skeletonema costatum, and with the increase of initial inoculation density of Heterosigma akashiwo, heavier inhibition on Skeletonema costatum appeared. Under different inoculation proportions, Heterosigma akashiwo could always be in predominance in competition with Skeletonema costatum. The UV-B radiation treatment could change the competition relationship between Skeletonema costatum and Heterosigma akashiwo, which could increase the competitive dominance of Skeletonema costatum and decrease the competitive dominance of Heterosigma akashiwo. When the inoculation proportions of Heterosigma akashiwo and Skeletonema costatum were H:S=1:4 and H:S=1:1, Skeletonema costatum was in predominance in this competition; however, Heterosigma akashiwo was in predominance when the inoculation proportion was H:S=4:1.
The responses of the interspecific competition between Skeletonema costatum and Heterosigma akashiwo to UV-B radiation enhancement were studied by the co-culture method. The results showed that Heterosigma akashiwo exhibited inhibition on the growth of Skeletonema costatum, and with the increase of initial inoculation density of Heterosigma akashiwo, heavier inhibition on Skeletonema costatum appeared. Under different inoculation proportions, Heterosigma akashiwo could always be in predominance in competition with Skeletonema costatum. The UV-B radiation treatment could change the competition relationship between Skeletonema costatum and Heterosigma akashiwo, which could increase the competitive dominance of Skeletonema costatum and decrease the competitive dominance of Heterosigma akashiwo. When the inoculation proportions of Heterosigma akashiwo and Skeletonema costatum were H:S=1:4 and H:S=1:1, Skeletonema costatum was in predominance in this competition; however, Heterosigma akashiwo was in predominance when the inoculation proportion was H:S=4:1.
2005, (2): 85-101.
Abstract:
Dilution experiments were performed to examine the growth rate and grazing mortality rate of size-fractionated phytoplankton at three typical stations, inside and outside the bay, in the spring and summer of 2003 in the Jiaozhou Bay, China. In spring, the phytoplankton community structure was similar among the three stations, and was mainly composed of nanophytoplankton, such as, Skeletonema costatum and Cylindrotheca closterium. The structure became significantly different for the three stations in summer, when the dominant species at Stas A, B and C were Chaetoceros curvisetus, Pseudo-nitzschia delicatissima, C. affinis, C. debilis, Coscinodiscus oculus-iridis and Paralia sulcata respectively. Tintinnopsis beroidea and T. tsingtaoensis were the dominant species in spring, whereas the microzooplankton was apparently dominated by Strombidium sp. in summer. Pico-and nanophytoplankton had a relatively greater growth rate than microzooplankton both in spring and summer. The growth rate and grazing mortality rate were 0.18~0.44 and 0.12~1.47 d-1 for the total phytoplankton and 0.20~0.55 and 0.21~0.37 d-1 for nanophytoplankton in spring respectively. In summer,the growth rate and grazing mortality rate were 0.38~0.71 and 0.27~0.60 d-1 for the total phytoplankton and 0.11~1.18 and 0.41~0.72d-1 for nano-and microphytoplankton respectively. The carbon flux consumed by microzooplankton per day was 7.68~39.81 mg/m3 in spring and 12.03~138.22 mg/m3 in summer respectively. Microzooplankton ingested 17.56%~92.19% of the phytoplankton standing stocks and 31.77%~467.88% of the potential primary productivity in spring; in contrast, they ingested 34.60%~83.04% of the phytoplankton standing stocks and 71.28%~98.80% of the potential primary productivity in summer. Pico-and nanophytoplankton appeared to have relatively greater rates of growth and grazing mortality than microphytoplankton during the experimental period. The grazing rate of microzooplankton in summer was a little bit greater than that in spring because of the relatively higher incubation temperature and different dominant microzooplankton species. Microzooplankton preferred ingesting nanophytoplankton to microphytoplankton in spring, while they preferred ingesting picophytoplankton to nanophytoplankton and microphytoplankton in summer. Compared with the results of dilution experiments performed in various waters worldwide, the results are in the middle range.
Dilution experiments were performed to examine the growth rate and grazing mortality rate of size-fractionated phytoplankton at three typical stations, inside and outside the bay, in the spring and summer of 2003 in the Jiaozhou Bay, China. In spring, the phytoplankton community structure was similar among the three stations, and was mainly composed of nanophytoplankton, such as, Skeletonema costatum and Cylindrotheca closterium. The structure became significantly different for the three stations in summer, when the dominant species at Stas A, B and C were Chaetoceros curvisetus, Pseudo-nitzschia delicatissima, C. affinis, C. debilis, Coscinodiscus oculus-iridis and Paralia sulcata respectively. Tintinnopsis beroidea and T. tsingtaoensis were the dominant species in spring, whereas the microzooplankton was apparently dominated by Strombidium sp. in summer. Pico-and nanophytoplankton had a relatively greater growth rate than microzooplankton both in spring and summer. The growth rate and grazing mortality rate were 0.18~0.44 and 0.12~1.47 d-1 for the total phytoplankton and 0.20~0.55 and 0.21~0.37 d-1 for nanophytoplankton in spring respectively. In summer,the growth rate and grazing mortality rate were 0.38~0.71 and 0.27~0.60 d-1 for the total phytoplankton and 0.11~1.18 and 0.41~0.72d-1 for nano-and microphytoplankton respectively. The carbon flux consumed by microzooplankton per day was 7.68~39.81 mg/m3 in spring and 12.03~138.22 mg/m3 in summer respectively. Microzooplankton ingested 17.56%~92.19% of the phytoplankton standing stocks and 31.77%~467.88% of the potential primary productivity in spring; in contrast, they ingested 34.60%~83.04% of the phytoplankton standing stocks and 71.28%~98.80% of the potential primary productivity in summer. Pico-and nanophytoplankton appeared to have relatively greater rates of growth and grazing mortality than microphytoplankton during the experimental period. The grazing rate of microzooplankton in summer was a little bit greater than that in spring because of the relatively higher incubation temperature and different dominant microzooplankton species. Microzooplankton preferred ingesting nanophytoplankton to microphytoplankton in spring, while they preferred ingesting picophytoplankton to nanophytoplankton and microphytoplankton in summer. Compared with the results of dilution experiments performed in various waters worldwide, the results are in the middle range.
2005, (2): 102-112.
Abstract:
Amphioxus is the ancestor of vertebrates 5×108 a ago, it is a typical transitional sample of evolution from invertebrates to vertebrates.Inter simple sequence repeats (ISSRs) and random amplified polymorphic DNAs (RAPDs) technologies were applied to detect the genetic variation of 3 bulking samples and individually sampled populations in nowadays Xiamen sea areas (Xiekou, Nanxian and Huangcuo) where the amphioxuses are alive. For the bulking sampled populations, 5 ISSR and 10 RAPD primers generated 357bands, of which 181 (50.7%) were polymorphic. Nei index and UPGMA statistical analysis indicated that amphioxuses in these 3areas could be divided into 2 groups. The genetic distance between animals in Nanxian and Huangcuo areas was 0.07 and classified into 1 group, while the population in Xiekou belonged to another group because its genetic distances in Nanxian and Huangcuo were 0.12 and 0.14, respectively. The result was in accordance with the morphological comparison among animals from those areas. For individually sampled population, Shannon's index of genetic diversity was used to partition the diversity of the animals among these 3sea areas, and the results showed that the indices in populations of Xiekou, Nanxian and Huangcuo, were 0.583, 0.482 and 0.374,respectively. The linear regression equation analysis for amphioxus' genetic diversity versus the environment factors revealed that granularity/sorting coefficient and water depth were the most important factors that affect amphioxus genetic diversity. On the basis of the results, the suggestions for amphioxus resource conservation in Xiamen sea areas are put forward.
Amphioxus is the ancestor of vertebrates 5×108 a ago, it is a typical transitional sample of evolution from invertebrates to vertebrates.Inter simple sequence repeats (ISSRs) and random amplified polymorphic DNAs (RAPDs) technologies were applied to detect the genetic variation of 3 bulking samples and individually sampled populations in nowadays Xiamen sea areas (Xiekou, Nanxian and Huangcuo) where the amphioxuses are alive. For the bulking sampled populations, 5 ISSR and 10 RAPD primers generated 357bands, of which 181 (50.7%) were polymorphic. Nei index and UPGMA statistical analysis indicated that amphioxuses in these 3areas could be divided into 2 groups. The genetic distance between animals in Nanxian and Huangcuo areas was 0.07 and classified into 1 group, while the population in Xiekou belonged to another group because its genetic distances in Nanxian and Huangcuo were 0.12 and 0.14, respectively. The result was in accordance with the morphological comparison among animals from those areas. For individually sampled population, Shannon's index of genetic diversity was used to partition the diversity of the animals among these 3sea areas, and the results showed that the indices in populations of Xiekou, Nanxian and Huangcuo, were 0.583, 0.482 and 0.374,respectively. The linear regression equation analysis for amphioxus' genetic diversity versus the environment factors revealed that granularity/sorting coefficient and water depth were the most important factors that affect amphioxus genetic diversity. On the basis of the results, the suggestions for amphioxus resource conservation in Xiamen sea areas are put forward.
2005, (2): 113-119.
Abstract:
A homologue of the lower vertebrates translationally controlled tumor protein (TCTP) was cloned from the marine fish Japanese sea perch (Lateolabrax japonicus) by the technology of homology cloning. The full-length cDNA sequence of the sea perch TCTP gene contained a 5' untranslated region (UTR) of 47 bp, a 3' UTR of 433 bp, and a putative open reading frame (ORF) of 510 bp encoding a polypeptide of 170 amino acids. The deduced amino acid sequence of the sea perch TCTP gene showed a high similarity to that ofzebrafish, rohu, rabbit, chicken and human. Sequence analysis revealed there were a signature sequence of TCTP family, an N-glycosylation site, and five Casein kinase phosphorylation sites in the sea perch TCTP. The temporal expression of TCTP genes in healthy and lipopolysaccharide (LPS) challenged fishes was measured by semi-quantitative reverse transcription-PCR (RT-PCR). The results indicated that LPS could up-regulate the expression of sea perch TCTP in the examined tissues, including head-kidney, spleen and liver.
A homologue of the lower vertebrates translationally controlled tumor protein (TCTP) was cloned from the marine fish Japanese sea perch (Lateolabrax japonicus) by the technology of homology cloning. The full-length cDNA sequence of the sea perch TCTP gene contained a 5' untranslated region (UTR) of 47 bp, a 3' UTR of 433 bp, and a putative open reading frame (ORF) of 510 bp encoding a polypeptide of 170 amino acids. The deduced amino acid sequence of the sea perch TCTP gene showed a high similarity to that ofzebrafish, rohu, rabbit, chicken and human. Sequence analysis revealed there were a signature sequence of TCTP family, an N-glycosylation site, and five Casein kinase phosphorylation sites in the sea perch TCTP. The temporal expression of TCTP genes in healthy and lipopolysaccharide (LPS) challenged fishes was measured by semi-quantitative reverse transcription-PCR (RT-PCR). The results indicated that LPS could up-regulate the expression of sea perch TCTP in the examined tissues, including head-kidney, spleen and liver.
2005, (2): 120-130.
Abstract:
Six genes encoding light-harvesting complex (LHC) protein have been characterized in the multicellular red alga Griffithsia japonica EST analysis. Three of them were full sequences while others were partial sequences with 3'-UTRs. The cleavage sites between signal peptide and mature LHC protein were analyzed on these three full sequences. The sequence characteristics, calculated molecular weights and isoelectric point (pI) values and hydrophobieity of the mature proteins were deduced and analyzed. Comparing the LHC sequences of G. japonica with higher plant, Chlorophyta, chromophytes and other red algae, the high conservation of the chlorophyll (Chl) binding site among chromophytes and red algae were revealed. Phylogenetic analysis on LHC proteins from higher plant, green algae, euglena, brown algae, diatom, cryptomonad, Raphidophyte and red algae reveals that (1) there are two distinct groups of Chl a/b and Chl a/c -binding LHC; (2) Chl a binding proteins of red algae share greater similarities with the Chl a/c-binding proteins of the chromophytes and dinoflagellate than with the Chl a/b-binding proteins of the green algae and higher plants; (3) chromophyte's LHC is supposed to be evolved from red algae LHC.
Six genes encoding light-harvesting complex (LHC) protein have been characterized in the multicellular red alga Griffithsia japonica EST analysis. Three of them were full sequences while others were partial sequences with 3'-UTRs. The cleavage sites between signal peptide and mature LHC protein were analyzed on these three full sequences. The sequence characteristics, calculated molecular weights and isoelectric point (pI) values and hydrophobieity of the mature proteins were deduced and analyzed. Comparing the LHC sequences of G. japonica with higher plant, Chlorophyta, chromophytes and other red algae, the high conservation of the chlorophyll (Chl) binding site among chromophytes and red algae were revealed. Phylogenetic analysis on LHC proteins from higher plant, green algae, euglena, brown algae, diatom, cryptomonad, Raphidophyte and red algae reveals that (1) there are two distinct groups of Chl a/b and Chl a/c -binding LHC; (2) Chl a binding proteins of red algae share greater similarities with the Chl a/c-binding proteins of the chromophytes and dinoflagellate than with the Chl a/b-binding proteins of the green algae and higher plants; (3) chromophyte's LHC is supposed to be evolved from red algae LHC.
2005, (2): 131-140.
Abstract:
Penaeidin from Chinese shrimp (Fenneropenaeus chinensis) has proved to be one of the most important antimicrobial peptides in the bodies of animals. The relative quantitative real-time PCR method is developed to study through time, the mRNA expression profile of penaeidin in the muscle and haemocyte tissue of Chinese shrimp infected with vibrio (Vibrio anguillarum) and WSSV (white spot syndrome virus). Research results showed that the same pathogens infection experiments produced similar gene expression profile in different tissues while different expression profiles appeared in the same tissues infected by different exterior pathogens. In vibrio infection experiments, a "U" like expression profile resulted. Expression levels of penaeidin increased and surpassed the non-stimulated level, indicating that penaeidin from Chinese shrimp has noticeable antimicrobial activities. In WSSV infection experiments, the expression profile appeared as an inverse "U" with the expression ofpenaeidin gradually decreasing to below baseline level afier 24 h.The expression of antimicrobial peptides gene in mRNA level in response to virus infection in shrimp showed that international mechanisms of virus to haemocytes and microbial to haemocytes are completely different. Decline of penaeidins expression levels may be due to haemocytes being destroyed by WSSV or that the virus can inhibit the expression of penaeidins by yet undiscovered modes. The expression profiles of penaeidin in response to exterior pathogen and the difference of expression profiles between vibrio and WSSV infection provided some clues to further understanding the complex innate immune mechanism in shrimp.
Penaeidin from Chinese shrimp (Fenneropenaeus chinensis) has proved to be one of the most important antimicrobial peptides in the bodies of animals. The relative quantitative real-time PCR method is developed to study through time, the mRNA expression profile of penaeidin in the muscle and haemocyte tissue of Chinese shrimp infected with vibrio (Vibrio anguillarum) and WSSV (white spot syndrome virus). Research results showed that the same pathogens infection experiments produced similar gene expression profile in different tissues while different expression profiles appeared in the same tissues infected by different exterior pathogens. In vibrio infection experiments, a "U" like expression profile resulted. Expression levels of penaeidin increased and surpassed the non-stimulated level, indicating that penaeidin from Chinese shrimp has noticeable antimicrobial activities. In WSSV infection experiments, the expression profile appeared as an inverse "U" with the expression ofpenaeidin gradually decreasing to below baseline level afier 24 h.The expression of antimicrobial peptides gene in mRNA level in response to virus infection in shrimp showed that international mechanisms of virus to haemocytes and microbial to haemocytes are completely different. Decline of penaeidins expression levels may be due to haemocytes being destroyed by WSSV or that the virus can inhibit the expression of penaeidins by yet undiscovered modes. The expression profiles of penaeidin in response to exterior pathogen and the difference of expression profiles between vibrio and WSSV infection provided some clues to further understanding the complex innate immune mechanism in shrimp.
2005, (2): 141-150.
Abstract:
The biomass, species composition and diversity of benthic diatom assemblages in mud-flat soils in Kandelia candel (L.) Druce communities with and without vegetation were studied seasonally at the Houyu Bay in Fuding City, Fujian Province, China. A total of 103taxa were identified (including varieties). Eighty-four taxa were found in the mud-flat with vegetation and 74 taxa in the mud-fiat without vegetation, while the biomass was large in January and April and decreased from July to October. The most abundant species in the mud-flat with vegetation are Nitzschia cocconeiformis, Gyrosigma scalproides and N. Fasciculata, compared with G. Scalproides and N.obtusa var. Scalpelliformis in the mud-flat without vegetation. High H' values at 2 sites during all seasons suggest that diatom assemblages in the sediments of the Houyu Bay represent an original environment. Multi-dimensional scaling of diatom assemblages from mud-flats with and without vegetation shows that a slight seasonal change and only a single association occur in the angroves.
The biomass, species composition and diversity of benthic diatom assemblages in mud-flat soils in Kandelia candel (L.) Druce communities with and without vegetation were studied seasonally at the Houyu Bay in Fuding City, Fujian Province, China. A total of 103taxa were identified (including varieties). Eighty-four taxa were found in the mud-flat with vegetation and 74 taxa in the mud-fiat without vegetation, while the biomass was large in January and April and decreased from July to October. The most abundant species in the mud-flat with vegetation are Nitzschia cocconeiformis, Gyrosigma scalproides and N. Fasciculata, compared with G. Scalproides and N.obtusa var. Scalpelliformis in the mud-flat without vegetation. High H' values at 2 sites during all seasons suggest that diatom assemblages in the sediments of the Houyu Bay represent an original environment. Multi-dimensional scaling of diatom assemblages from mud-flats with and without vegetation shows that a slight seasonal change and only a single association occur in the angroves.
2005, (2): 151-158.
Abstract:
Many estuarine and coastal planktonic copepods depend on the hatching of benthic resting eggs for recruitment of nauplii to the water column population. The distribution and abundance of viable resting eggs of Acartia pacifica in the Xiamen Bay were determined by the presence of nauplii in the laboratory. The number of viable eggs varied temporally and spatially. The maximum number (9.2×104m-2) of viable eggs was in summer. In spring the average abundance of viable eggs was 5.6×104 m-2. The abundances of viable eggs in fall and winter were similar, respectively 2.7×104 and 3.3×104 m-2, which were the lowest in the year. The numbers of viable eggs inside the stations of the Xiamen Bay were higher than those outside the stations. The viable eggs were found at all depths (0~10 cm),although not in every station. The maximin number did not necessarily occur in the uppermost centimeter of the sediments but often occurred several centimeters below the water-sediment interface. The accumulation of viable eggs in the seabed of a subtropical bay constitutes a potential source of recruitment of nauplii into the pelagic population.
Many estuarine and coastal planktonic copepods depend on the hatching of benthic resting eggs for recruitment of nauplii to the water column population. The distribution and abundance of viable resting eggs of Acartia pacifica in the Xiamen Bay were determined by the presence of nauplii in the laboratory. The number of viable eggs varied temporally and spatially. The maximum number (9.2×104m-2) of viable eggs was in summer. In spring the average abundance of viable eggs was 5.6×104 m-2. The abundances of viable eggs in fall and winter were similar, respectively 2.7×104 and 3.3×104 m-2, which were the lowest in the year. The numbers of viable eggs inside the stations of the Xiamen Bay were higher than those outside the stations. The viable eggs were found at all depths (0~10 cm),although not in every station. The maximin number did not necessarily occur in the uppermost centimeter of the sediments but often occurred several centimeters below the water-sediment interface. The accumulation of viable eggs in the seabed of a subtropical bay constitutes a potential source of recruitment of nauplii into the pelagic population.
