Citation: | Caixia Wang, Lin Wu, Yibo Wang, James S. Paterson, James G. Mitchell, Xiaoke Hu. Coupling virio- and bacterioplankton populations with environmental variable changes in the Bohai Sea[J]. Acta Oceanologica Sinica, 2020, 39(6): 72-83. doi: 10.1007/s13131-020-1591-3 |
[1] |
Aristegui J, Gasol J M, Duarte C M, et al. 2009. Microbial oceanography of the dark ocean’s pelagic realm. Limnology and Oceanography, 54(5): 1501–1529. doi: 10.4319/lo.2009.54.5.1501
|
[2] |
Arrigo K R. 2005. Marine microorganisms and global nutrient cycles. Nature, 437(7057): 349–355. doi: 10.1038/nature04159
|
[3] |
Azam F. 1998. Microbial control of oceanic carbon flux: the plot thickens. Science, 280(5364): 694–696. doi: 10.1126/science.280.5364.694
|
[4] |
Azam F, Fenchel T, Field J G, et al. 1983. The ecological role of water-column microbes in the sea. Marine Ecology Progress Series, 10: 257–263. doi: 10.3354/meps010257
|
[5] |
Azam F, Malfatti F. 2007. Microbial structuring of marine ecosystems. Nature Reviews Microbiology, 5(10): 782–791. doi: 10.1038/nrmicro1747
|
[6] |
Bai Xiaoge, Wang Min, Liang Yantao, et al. 2012. Distribution of microbial populations and their relationship with environmental variables in the North Yellow Sea, China. Journal of Ocean University of China, 11(1): 75–85. doi: 10.1007/s11802-012-1799-8
|
[7] |
Barbieux M, Uitz J, Gentili B, et al. 2019. Bio-optical characterization of subsurface chlorophyll maxima in the Mediterranean Sea from a Biogeochemical-Argo float database. Biogeosciences, 16(6): 1321–1342. doi: 10.5194/bg-16-1321-2019
|
[8] |
Bettarel Y, Sime-Ngando T, Amblard C, et al. 2004. Viral activity in two contrasting lake ecosystems. Applied and Environmental Microbiology, 70(5): 2941–2951. doi: 10.1128/AEM.70.5.2941-2951.2004
|
[9] |
Bongiorni L, Magagnini M, Armeni M, et al. 2005. Viral production, decay rates, and life strategies along a trophic gradient in the North Adriatic Sea. Applied and Environmental Microbiology, 71(11): 6644–6650. doi: 10.1128/AEM.71.11.6644-6650.2005
|
[10] |
Bouvier T, del Giorgio P A, Gasol J M. 2007. A comparative study of the cytometric characteristics of High and Low nucleic-acid bacterioplankton cells from different aquatic ecosystems. Environmental Microbiology, 9(8): 2050–2066. doi: 10.1111/j.1462-2920.2007.01321.x
|
[11] |
Bouvier T, Maurice C F. 2011. A single-cell analysis of Virioplankton adsorption, infection, and intracellular abundance in different Bacterioplankton physiologic categories. Microbial Ecology, 62(3): 669–678. doi: 10.1007/s00248-011-9862-3
|
[12] |
Breitbart M, Bonnain C, Malki K, et al. 2018. Phage puppet masters of the marine microbial realm. Nature Microbiology, 3(7): 754–766. doi: 10.1038/s41564-018-0166-y
|
[13] |
Brussaard C P D. 2004. Optimization of procedures for counting viruses by flow cytometry. Applied and Environmental Microbiology, 70(3): 1506–1513. doi: 10.1128/AEM.70.3.1506-1513.2004
|
[14] |
Buitenhuis E T, Li W K W, Lomas M W, et al. 2012. Bacterial biomass distribution in the global ocean. Earth System Science Data, 5(1): 301–315. doi: 10.5194/essdd-5-301-2012
|
[15] |
Chen Changsheng, Liu Hedong, Beardsley R C. 2003. An unstructured grid, finite-volume, three-dimensional, primitive equations ocean model: application to coastal ocean and estuaries. Journal of Atmospheric and Oceanic Technology, 20(1): 159–186. doi: 10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2
|
[16] |
Dann L M, McKerral J C, Smith R J, et al. 2018. Microbial micropatches within microbial hotspots. PLoS One, 13(5): e0197224. doi: 10.1371/journal.pone.0197224
|
[17] |
Danovaro R. 1998. Do bacteria compete with phytoplankton for inorganic nutrients? Possible ecological implications. Chemistry and Ecology, 14(2): 83–96. doi: 10.1080/02757549808035544
|
[18] |
DeLong E F, Karl D M. 2005. Genomic perspectives in microbial oceanography. Nature, 437(7057): 336–342. doi: 10.1038/nature04157
|
[19] |
Fischer U R, Velimirov B. 2002. High control of bacterial production by viruses in a eutrophic oxbow lake. Aquatic Microbial Ecology, 27(1): 1–12
|
[20] |
Fuhrman J A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature, 399(6736): 541–548. doi: 10.1038/21119
|
[21] |
Gao Xuelu, Zhou Fengxia, Chen C T A. 2014. Pollution status of the Bohai Sea: an overview of the environmental quality assessment related trace metals. Environment International, 62: 12–30. doi: 10.1016/j.envint.2013.09.019
|
[22] |
Gomes A, Gasol J M, Estrada M, et al. 2015. Heterotrophic bacterial responses to the winter-spring phytoplankton bloom in open waters of the NW Mediterranean. Deep Sea Research Part I: Oceanographic Research Papers, 96: 59–68. doi: 10.1016/j.dsr.2014.11.007
|
[23] |
Gözdereliler E, Boon N, Aamand J, et al. 2013. Comparing metabolic functionalities, community structures, and dynamics of herbicide-degrading communities cultivated with different substrate concentrations. Applied and Environmental Microbiology, 79(1): 367–375. doi: 10.1128/AEM.02536-12
|
[24] |
Guidi L, Chaffron S, Bittner L, et al. 2016. Plankton networks driving carbon export in the oligotrophic ocean. Nature, 532(7600): 465–470. doi: 10.1038/nature16942
|
[25] |
Jacquet S, Domaizon I, Personnic S, et al. 2005. Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France). Freshwater Biology, 50(4): 627–645. doi: 10.1111/j.1365-2427.2005.01349.x
|
[26] |
Jiang S C, Paul J H. 1994. Seasonal and diel abundance of viruses and occurrence of lysogeny/bacteriocinogeny in the marine environment. Marine Ecology Progress Series, 104: 163–172. doi: 10.3354/meps104163
|
[27] |
Jiao Nianzhi, Yang Yanhui, Hong Ning, et al. 2005. Dynamics of autotrophic picoplankton and heterotrophic bacteria in the East China Sea. Continental Shelf Research, 25(10): 1265–1279. doi: 10.1016/j.csr.2005.01.002
|
[28] |
Katano T, Nakano S I, Mitamura O, et al. 2008. Abundance and pigment type composition of picocyanobacteria in Barguzin Bay, Lake Baikal. Limnology, 9(2): 105–114. doi: 10.1007/s10201-008-0239-3
|
[29] |
Larsen J B, Larsen A, Thyrhaug R, et al. 2008. Response of marine viral populations to a nutrient induced phytoplankton bloom at different pCO2 levels. Biogeosciences, 5(2): 523–533. doi: 10.5194/bg-5-523-2008
|
[30] |
Lasternas S, Agustí S, Duarte C M. 2010. Phyto- and bacterioplankton abundance and viability and their relationship with phosphorus across the Mediterranean Sea. Aquatic Microbial Ecology, 60(2): 175–191. doi: 10.3354/ame01421
|
[31] |
Li W K W, Jellett J F, Dickie P M. 1995. DNA distributions in planktonic bacteria stained with TOTO or TO-PRO. Limnology and Oceanography, 40(8): 1485–1495. doi: 10.4319/lo.1995.40.8.1485
|
[32] |
Li Shuyuan, Miao Fengmin, Liu Guoxian, et al. 1996. The study of pollution history of heavy metals in Bohai Sea. Marine Environmental Science (in Chinese), 15(4): 28–31
|
[33] |
Li Hongbo, Xiao Tian, Ding Tao, et al. 2006. Effect of the Yellow Sea Cold Water Mass (YSCWM) on distribution of bacterioplankton. Acta Ecologica Sinica, 26(4): 1012–1020. doi: 10.1016/S1872-2032(06)60020-6
|
[34] |
Liang Yantao, Li Li, Luo Tingwei, et al. 2014. Horizontal and vertical distribution of marine virioplankton: a basin scale investigation based on a global cruise. PLoS One, 9(11): e111634. doi: 10.1371/journal.pone.0111634
|
[35] |
Lie H J. 1984. A note on water masses and general circulation in the Yellow Sea (Hwanghae). Journal of Oceanological Society of Korea, 19(2): 187–194
|
[36] |
Liu Yanming, Zhang Qiya, Yuan Xiuping, et al. 2006. Seasonal variation of virioplankton in a eutrophic shallow lake. Hydrobiologia, 560(1): 323–334. doi: 10.1007/s10750-005-1280-4
|
[37] |
Longnecker K, Sherr B F, Sherr E B. 2005. Activity and phylogenetic diversity of bacterial cells with high and low nucleic acid content and electron transport system activity in an upwelling ecosystem. Applied and Environmental Microbiology, 71(12): 7737–7749. doi: 10.1128/AEM.71.12.7737-7749.2005
|
[38] |
Ma Jian, Qiao Fangli, Xia Changshui, et al. 2006. Effects of the Yellow Sea Warm Current on the winter temperature distribution in a numerical model. Journal of Geophysical Research: Oceans, 111(C11): C11S04
|
[39] |
Marie D, Partensky F, Jacquet S, et al. 1997. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR Green I. Applied and Environmental Microbiology, 63(1): 186–193. doi: 10.1128/AEM.63.1.186-193.1997
|
[40] |
Nagata T, Fukuda H, Fukuda R, et al. 2000. Bacterioplankton distribution and production in deep Pacific waters: large-scale geographic variations and possible coupling with sinking particle fluxes. Limnology and Oceanography, 45(2): 426–435. doi: 10.4319/lo.2000.45.2.0426
|
[41] |
Pan L A, Zhang J, Zhang L H. 2007. Picophytoplankton, nanophytoplankton, heterotrohpic bacteria and viruses in the Changjiang Estuary and adjacent coastal waters. Journal of Plankton Research, 29(2): 187–197. doi: 10.1093/plankt/fbm006
|
[42] |
Paterson J S, Nayar S, Mitchell J G, et al. 2013. Population-specific shifts in viral and microbial abundance within a cryptic upwelling. Journal of Marine Systems, 113−114: 52–61. doi: 10.1016/j.jmarsys.2012.12.009
|
[43] |
Pradeu T. 2016. Mutualistic viruses and the heteronomy of life. Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 59: 80–88. doi: 10.1016/j.shpsc.2016.02.007
|
[44] |
Rösel S, Grossart H P. 2012. Contrasting dynamics in activity and community composition of free-living and particle-associated bacteria in spring. Aquatic Microbial Ecology, 66(2): 169–181. doi: 10.3354/ame01568
|
[45] |
Sandaa R A, Gómez-Consarnau L, Pinhassi J, et al. 2009. Viral control of bacterial biodiversity-evidence from a nutrient-enriched marine mesocosm experiment. Environmental Microbiology, 11(10): 2585–2597. doi: 10.1111/j.1462-2920.2009.01983.x
|
[46] |
Schapira M, Buscot M J, Leterme S C, et al. 2009. Distribution of heterotrophic bacteria and virus-like particles along a salinity gradient in a hypersaline coastal lagoon. Aquatic Microbial Ecology, 54(2): 171–183. doi: 10.3354/ame01262
|
[47] |
Seymour J R, Patten N, Bourne D G, et al. 2005. Spatial dynamics of virus-like particles and heterotrophic bacteria within a shallow coral reef system. Marine Ecology Progress Series, 288: 1–8. doi: 10.3354/meps288001
|
[48] |
Shelford E J, Suttle C A. 2018. Virus-mediated transfer of nitrogen from heterotrophic bacteria to phytoplankton. Biogeosciences, 15(3): 809–819. doi: 10.5194/bg-15-809-2018
|
[49] |
Sieradzki E T, Ignacio-Espinoza J C, Needham D M, et al. 2019. Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes. Nature Communications, 10(1): 1169. doi: 10.1038/s41467-019-09106-z
|
[50] |
Siokou-Frangou I, Christaki U, Mazzocchi M G, et al. 2010. Plankton in the open Mediterranean Sea: a review. Biogeosciences, 7(5): 1543–1586. doi: 10.5194/bg-7-1543-2010
|
[51] |
Stroinov Y V, Romanenko A V, Maslennikova T S, et al. 2011. Virio-and bacterioplankton of a small river: influence that viruses have on the mortality of heterotrophic bacteria. Inland Water Biology, 4(3): 293–300. doi: 10.1134/S1995082911030175
|
[52] |
Suttle C A. 2005. Viruses in the sea. Nature, 437(7057): 356–361. doi: 10.1038/nature04160
|
[53] |
Valdés V, Carlotti F, Escribano R, et al. 2018. Nitrogen and phosphorus recycling mediated by copepods and response of bacterioplankton community from three contrasting areas in the western tropical South Pacific (20°S). Biogeosciences, 15(20): 6019–6032. doi: 10.5194/bg-15-6019-2018
|
[54] |
Vrede K, Stensdotter U, Lindström E S. 2003. Viral and Bacterioplankton dynamics in two lakes with different Humic contents. Microbial Ecology, 46(4): 406–415. doi: 10.1007/s00248-003-2009-4
|
[55] |
Wang Qiang, Guo Xinyu, Takeoka H. 2008. Seasonal variations of the Yellow River plume in the Bohai Sea: a model study. Journal of Geophysical Research: Oceans, 113(C8): C08046
|
[56] |
Wang Caixia, Wang Yibo, Paterson J S, et al. 2016. Macroscale distribution of virioplankton and heterotrophic bacteria in the Bohai Sea. FEMS Microbiology Ecology, 92(3): fiw017. doi: 10.1093/femsec/fiw017
|
[57] |
Weinbauer M G. 2004. Ecology of prokaryotic viruses. FEMS Microbiology Reviews, 28(2): 127–181. doi: 10.1016/j.femsre.2003.08.001
|
[58] |
Wommack K E, Colwell R R. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiology and Molecular Biology Reviews, 64(1): 69–114. doi: 10.1128/MMBR.64.1.69-114.2000
|
[59] |
Xin Ming, Ma Deyi, Wang Baodong. 2015. Chemicohydrographic characteristics of the Yellow Sea Cold Water Mass. Acta Oceanologica Sinica, 34(6): 5–11. doi: 10.1007/s13131-015-0681-0
|
[60] |
Xu Lingling, Wu Dexing, Lin Xiaopei, et al. 2009. The study of the yellow sea warm current and its seasonal variability. Journal of Hydrodynamics, 21(2): 159–165. doi: 10.1016/S1001-6058(08)60133-X
|
[61] |
Xu Yunping, Zhou Shangzhe, Hu Limin, et al. 2018. Different controls on sedimentary organic carbon in the Bohai Sea: river mouth relocation, turbidity and eutrophication. Journal of Marine Systems, 180: 1–8. doi: 10.1016/j.jmarsys.2017.12.004
|
[62] |
Yang Wen, Zheng Cheng, Zheng Zhongming, et al. 2018. Nutrient enrichment during shrimp cultivation alters bacterioplankton assemblies and destroys community stability. Ecotoxicology and Environmental Safety, 156: 366–374. doi: 10.1016/j.ecoenv.2018.03.043
|
[63] |
Yu Shaolan, Yao Peng, Liu Jiwen, et al. 2016. Diversity, abundance, and niche differentiation of ammonia-oxidizing prokaryotes in mud deposits of the eastern China marginal seas. Frontiers in Microbiology, 7: 137
|
[64] |
Zhang Zhaohui, Zhu Mingyuan, Wang Zongling, et al. 2006. Monitoring and managing pollution load in Bohai Sea, PR China. Ocean & Coastal Management, 49(9–10): 706–716
|