Citation: | OU Danyun, CHEN Bin, HADI Tri Aryono, SUHARSONO null, NIU Wentao, ALFIANSAH Yustian Rovi. Next-generation sequencing revealed specific microbial symbionts in Porites lutea with pigment abnormalities in North Sulawesi, Indonesia[J]. Acta Oceanologica Sinica, 2018, 37(12): 78-84. doi: 10.1007/s13131-018-1291-4 |
Austin B, Austin D, Sutherland R, et al. 2005. Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environmental Microbiology, 7(9): 1488-1495, doi: 10.1111/emi.2005.7.issue-9
|
Ben-Haim Y, Rosenberg E. 2002. A novel Vibrio sp.pathogen of the coral Pocillopora damicornis. Marine Biology, 141(1): 47-55, doi: 10.1007/s00227-002-0797-6
|
Ben-Haim Y, Zicherman-Keren M, Rosenberg E. 2003. Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coralliilyticus. Applied and Environmental Microbiology, 69(7): 4236-4242, doi: 10.1128/AEM.69.7.4236-4242.2003
|
Benzoni F, Galli P, Pichon M. 2010. Pink spots on Porites: not always a coral disease. Coral Reefs, 29(1): 153, doi: 10.1007/s00338-009-0571-z
|
Bourne D G, Garren M, Work T M, et al. 2009. Microbial disease and the coral holobiont. Trends in Microbiology, 17(12): 554-562, doi: 10.1016/j.tim.2009.09.004
|
Caporaso J G, Kuczynski J, Stombaugh J, et al. 2010. QⅡME allows analysis of high-throughput community sequencing data. Nature Methods, 7(5): 335-336, doi: 10.1038/nmeth.f.303
|
Cervino J M, Hayes R L, Polson S W, et al. 2004. Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals. Applied and Environmental Microbiology, 70(11): 6855-6864, doi: 10.1128/AEM.70.11.6855-6864.2004
|
Costello E K, Lauber C L, Hamady M, et al. 2009. Bacterial community variation in human body habitats across space and time. Science, 326(5960): 1694-1697, doi: 10.1126/science.1177486
|
De Castro A P, Araújo Jr S D, Reis A M M, et al. 2010. Bacterial community associated with healthy and diseased reef coral Mussismilia hispida from eastern Brazil. Microbial Ecology, 59(4): 658-667, doi: 10.1007/s00248-010-9646-1
|
Hill T C J, Walsh K A, Harris J A, et al. 2003. Using ecological diversity measures with bacterial communities. FEMS Microbiology Ecology, 43(1): 1-11, doi: 10.1111/fem.2003.43.issue-1
|
Kushmaro A, Banin E, Loya Y, et al. 2001. Vibrio shiloi sp.nov., the causative agent of bleaching of the coral Oculina patagonica. International Journal of Systematic and Evolutionary Microbiology, 51(4): 1383-1388, doi: 10.1099/00207713-51-4-1383
|
Kushmaro A, Loya Y, Fine M, et al. 1996. Bacterial infection and coral bleaching. Nature, 380(6573): 396
|
Kushmaro A, Rosenberg E, Fine M, et al. 1997. Bleaching of the coral Oculina patagonica by Vibrio AK-1. Marine Ecology Progress Series, 147: 159-165, doi: 10.3354/meps147159
|
Li Jie, Chen Qi, Long Lijuan, et al. 2014. Bacterial dynamics within the mucus, tissue and skeleton of the coral Porites lutea during different seasons. Scientific Reports, 4: 7320
|
Liu Yang, Yao Su, Xu Pengpeng, et al. 2014. Composition and diversity of endophytic bacterial communities in Noni (Morinda citrifolia L.) seeds. International Journal of Agricultural Policy and Research, 2(3): 98-104
|
Lough J M. 2010. Climate records from corals. WIREs Climate Change, 1(3): 318-331, doi: 10.1002/wcc.39
|
Morrow K M, Moss A G, Chadwick N E, et al. 2012. Bacterial associates of two Caribbean coral species reveal species-specific distribution and geographic variability. Applied and Environmental Microbiology, 78(18): 6438-6449, doi: 10.1128/AEM.01162-12
|
Neish A S. 2009. Microbes in gastrointestinal health and disease. Gastroenterology, 136(1): 65-80, doi: 10.1053/j.gastro.2008.10.080
|
Pantos O, Cooney R P, Le Tissier M D A, et al. 2003. The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis. Environmental Microbiology, 5(5): 370-382, doi: 10.1046/j.1462-2920.2003.00427.x
|
Pruesse E, Quast C, Knittel K, et al. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research, 35(21): 7188-7196, doi: 10.1093/nar/gkm864
|
Raymundo L J, Rosell K B, Reboton C T, et al. 2005. Coral diseases on Philippine reefs: genus Porites is a dominant host. Diseases of Aquatic Organisms, 64(3): 181-191
|
Reeder J, Knight R. 2010. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nature Methods, 7(9): 668-669
|
Rognes T, Flouri T, Nichols B, et al. 2016. VSEARCH: a versatile open source tool for metagenomics. PeerJ, 4(17): e2584
|
Rohwer F, Seguritan V, Azam F, et al. 2002. Diversity and distribution of coral-associated bacteria. Marine Ecology Progress Series, 243: 1-10, doi: 10.3354/meps243001
|
Séré M G, Tortosa P, Chabanet P, et al. 2013. Bacterial communities associated with Porites white patch syndrome (PWPS) on three western Indian Ocean (WIO) coral reefs. PLoS One, 8(12): e83746, doi: 10.1371/journal.pone.0083746
|
Salipante S J, Sengupta D J, Rosenthal C, et al. 2013. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections. PLoS One, 8(5): e65226, doi: 10.1371/journal.pone.0065226
|
Sunagawa S, DeSantis T Z, Piceno Y M, et al. 2009. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. The ISME Journal, 3(5): 512-521, doi: 10.1038/ismej.2008.131
|
Sussman M. 2009. Coral disease pathogens of the Indo-Pacific Ocean [dissertation]. Townsville: James Cook University
|
Suzuki A, Kawahata H, Tanimoto Y, et al. 2000. Skeletal isotopic record of a Porites coral during the 1998 mass bleaching event. Geochemical Journal, 34(4): 321-329, doi: 10.2343/geochemj.34.321
|
Thurber R L V, Barott K L, Hall D, et al. 2008. Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proceedings of the National Academy of Sciences of the United States of America, 105(47): 18413-18418, doi: 10.1073/pnas.0808985105
|
Wang Qiong, Garrity G M, Tiedje J M, et al. 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73(16): 5261-5267, doi: 10.1128/AEM.00062-07
|
Webster N S, Taylor M W. 2012. Marine sponges and their microbial symbionts: love and other relationships. Environmental Microbiology, 14(2): 335-346, doi: 10.1111/j.1462-2920.2011.02460.x
|
Wegley L, Edwards R, Rodriguez-Brito B, et al. 2007. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environmental Microbiology, 9(11): 2707-2719, doi: 10.1111/emi.2007.9.issue-11
|