Phylogenetic and morphometric relationships between two species of genus <i>Auxis</i> from the South China Sea and Java Sea

HABIB Ahasan; SULAIMAN Zohrah

doi:10.1007/s13131-016-0915-9

Article Contents

Article Navigation > Acta Oceanologica Sinica > 2016 > 35(10): 76-82

HABIB Ahasan, SULAIMAN Zohrah. Phylogenetic and morphometric relationships between two species of genus Auxis from the South China Sea and Java Sea[J]. Acta Oceanologica Sinica, 2016, 35(10): 76-82. doi: 10.1007/s13131-016-0915-9

Citation:

HABIB Ahasan, SULAIMAN Zohrah. Phylogenetic and morphometric relationships between two species of genus Auxis from the South China Sea and Java Sea[J]. Acta Oceanologica Sinica, 2016, 35(10): 76-82. doi: 10.1007/s13131-016-0915-9

Citation:

PDF( 7825 KB)

Phylogenetic and morphometric relationships between two species of genus Auxis from the South China Sea and Java Sea

doi: 10.1007/s13131-016-0915-9

HABIB Ahasan^1
,,
SULAIMAN Zohrah²

1.
Environmental and Life Sciences Programme, Faculty of Science, Universiti Brunei Darussalam, Jalan Tungku, Gadong BE 1410, Brunei Darussalam;Department of Fisheries and Marine Science, Noakhali Science and Technology University, Sonapur-3814, Noakhali, Bangladesh
2.
Environmental and Life Sciences Programme, Faculty of Science, Universiti Brunei Darussalam, Jalan Tungku, Gadong BE 1410, Brunei Darussalam;Universiti Teknologi Brunei, Jalan Tungku, Gadong BE 1410, Brunei Darussalam

Received Date: 2014-09-28
Rev Recd Date: 2015-12-22

Abstract

Abstract

This study was aimed at examining the phylogenetic and morphometric relationship of frigate tuna (Auxis thazard) and bullet tuna (Auxis rochei) using mtDNA D-loop (control) region sequences and truss measurements, respectively. Maximum-likelihood (ML) tree and median-joining network showed that haplotypes from Auxis populations grouped separately. Discriminant function analyses and non-metric multidimensional scaling of morphometric data showed that bullet and frigate tuna were differed mainly with respect to truss measurements on the anterior region, suggesting adaptation to different diets available in different environments. Historic demographic analyses of sequence data showed that both bullet and frigate tuna had not undergone a significant sudden population expansion recently. Non-significant value of Tajimas's D and Fu's F_S were indicated an effective large and stable population size for longer period of both species in South China Sea and Java Sea species. This study gives first report on the complementary relationship between morphometric and genetic analysis in stock discrimination of genus Auxis.
- phylogenetic relationship,
- mtDNA D-loop,
- morphometric analysis,
- Auxis thazard,
- Auxis rochei

FullText(HTML)

References(44)

References

Akdag C. 1996. Tidal analysis of the South China Sea[dissertation]. Delft:Delft University of Technology, 85

Amin S M N, Arshad A, Ismail N H, et al. 2010. Morphometric vari-ation among the three species of genus Acetes (Decapoda:Sergestidae) in the coastal waters of Malacca, Peninsular Malaysia. Pertanika Journal of Tropical Agricultural Science, 33(2):341-347

Balushkin A. 2000. Morphology, classification, and evolution of no-tothenioid fishes of the Southern Ocean (Notothenioidei, Perci-formes). Journal of Ichthyology, 40(S1):S74-S109

Bandelt H J, Forster P, R.hl A. 1999. Median-joining networks for in-ferring intraspecific phylogenies. Molecular Biology and Evolu-tion, 16(1):37-48

Catanese G, Infante C, Manchado M. 2008. Complete mitochondrial DNA sequences of the frigate tuna Auxis thazard and the bullet tuna Auxis rochei. DNA Sequence, 19(3):159-166

Collette B B, Aadland C R. 1996. Revision of the frigate tunas (Scom-bridae, Auxis), with descriptions of two new subspecies from the eastern Pacific. Fishery Bulletin, 94(3):423-441

Collette B B, Nauen C E. 1983. Scombrids of the World:An Annotated and Illustrated Catalogue of Tunas, Mackerels, Bonitos, and Re-lated Species Known to Date. Rome:Food and Agriculture Or-ganization of the United Nations, 125

Darlina M N, Masazurah A R, Jayasankar P, et al. 2011. Morphomet-ric and molecular analysis of mackerel (Rastrelliger spp) from the west coast of Peninsular Malaysia. Genetics and Molecular Research, 10(3):2078-2092

DOF. 2012. Brunei Darussalam Fisheries Statistics in Brief 2011. De-partment of Fisheries, a yearly statiscal book. Brunei Darus-salam:Ministry of Industry and Primary Resources

Durand J D, Collet A, Chow S, et al. 2005. Nuclear and mitochondrial DNA markers indicate unidirectional gene flow of Indo-Pacific to Atlantic bigeye tuna (Thunnus obesus) populations, and their admixture off southern Africa. Marine Biology, 147(2):313-322

Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0):an in-tegrated software package for population genetics data analys-is. Evolutionary Bioinformatics Online, 1:47-50

Felsenstein J. 1985. Confidence limits on phylogenies:an approach using the bootstrap. Evolution, 39(4):783-791

Fu Yunxin. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Ge-netics, 147(2):915-925

Ghosh S, Sivadas M, Abdussamad E, et al. 2012. Fishery, population dynamics and stock structure of frigate tuna Auxis thazard (La-cepede, 1800) exploited from Indian waters. Indian Journal of Fisheries, 59(2):95-100

Grant W A S, Bowen B W. 1998. Shallow population histories in deep evolutionary lineages of marine fishes:insights from sardines and anchovies and lessons for conservation. Journal of Hered-ity, 89(5):415-426

Guizani N, Al-Busaidy M A, Al-Belushi I M, et al. 2005. The effect of storage temperature on histamine production and the fresh-ness of yellowfin tuna (Thunnus albacares). Food Research In-ternational, 38(2):215-222

Harpending H C. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hu-man Biology, 66(4):591-600

Hu Jianyu, Kawamura H, Hong Huasheng, et al. 2000. A review on the currents in the South China Sea:seasonal circulation, South China Sea warm current and Kuroshio intrusion. Journal of Oceanography, 56(6):607-624

Hunter J R. 1981. Feeding ecology and predation of marine fish lar-vae. In:Lasker R, ed. Marine Fish Larvae:Morphology, Ecology, and Relation to Fisheries. Seattle:University of Washington Press, 34-37

Iwami T. 1985. Osteology and relationships of the family Channich-thyidae. Memoirs of National Institute of Polar Research. Series E, Biology and Medical Science, 36:1-69

Jasmine S, Rohit P, Abdussamad E M, et al. 2013. Biology and fishery of the bullet tuna, Auxis rochei (Risso, 1810) in Indian waters. Indian Journal of Fisheries, 60(2):13-20

Klingenberg C P, Ekau W. 1996. A combined morphometric and phylogenetic analysis of an ecomorphological trend:pelagiza-tion in Antarctic fishes (Perciformes:Nototheniidae). Biologic-al Journal of the Linnean Society, 59(2):143-177

Kumar G, Kunal S P, Menezes M R. 2012. Genetic stock structure of frigate tuna (Auxis thazard) along Indian coast based on PCR-RFLP analyses of mtDNA D-Loop region. Turkish Journal of Fisheries and Aquatic Sciences, 12(4):893-903

Kumar G, Kunal S P, Shyama S K. 2013. Evolutionary history and phylogenetic relationship between Auxis thazard and Auxis rochei inferred from COI sequences of mtDNA. International Journal of Bioinformatics Research and Applications, 9(6):604-613

Librado P, Rozas J. 2009. DnaSP v5:a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25(11):1451-1452

Mattson E, Belk M C. 2013. Intraspecific morphological variation in two common marine fish spe-cies from South Africa. The Open Fish Science Journal, 6(1):87-91

Muthiah C. 1985. Maturation and spawning of Euthynnus affinis, Auxis thazard and Auxis rochei in the Mangalore inshore area during 1979-82. In:Silas E G, ed. Tuna Fisheries of the Exclus-ive Economic Zone of India:Biology and Stock Assessment. CMFRI Bulletin 36. Cochin, India:Central Marine Fisheries Re-search Institute

Near T J, Pesavento J J, Cheng C H C. 2003. Mitochondrial DNA, mor-phology, and the phylogenetic relationships of Antarctic ice-fishes (Notothenioidei:Channichthyidae). Molecular Phylo-genetics and Evolution, 28(1):87-98

Nei M. 1987. Molecular Evolutionary Genetics. New York:Columbia University Press

Nei M, Kumar S. 2000. Molecular Evolution and Phylogenetics. New York:Oxford University Press

Ovenden J R, Lloyd J, Newman S J, et al. 2002. Spatial genetic subdivi-sion between northern Australian and southeast Asian popula-tions of Pristipomoides multidens:a tropical marine reef fish species. Fisheries Research, 59(1-2):57-69

Palm H W, Damriyasa I M, Oka I B M. 2008. Molecular genotyping of Anisakis Dujardin, 1845 (Nematoda:Ascaridoidea:Anisakidae) larvae from marine fish of Balinese and Javanese waters, In-donesia. Helminthologia, 45(1):3-12

Palma J, Andrade J P. 2002. Morphological study of Diplodus sargus, Diplodus puntazzo, and Lithognathus mormyrus (Sparidae) in the Eastern Atlantic and Mediterranean Sea. Fisheries Re-search, 57(1):1-8

Purwanto. 2003. Status and management of the Java Sea fisheries. In:Silvestre G, Graces L, Stobutzki I, et al., eds. vol 67. Assessment, management and future Directions for coastal fisheries in Asi-an countries. WorldFish Center Conf Proc, 793-832

Ramos-Onsins S E, Rozas J. 2002. Statistical properties of new neut-rality tests against population growth. Molecular Biology and Evolution, 19(12):2092-2100

Reed D H, Briscoe D A, Frankham R. 2002. Inbreeding and extinction:the effect of environmental stress and lineage. Conservation Genetics, 3(3):301-307

Schneider S, Excoffier L. 1999. Estimation of past demographic para-meters from the distribution of pairwise differences when the mutation rates vary among sites:application to human mito-chondrial DNA. Genetics, 152(3):1079-1089

Sulaiman Z H, Ovenden J R. 2010. Population genetic evidence for the east-west division of the narrow-barred Spanish mackerel (Scomberomorus commerson, Perciformes:Teleostei) along Wallace's Line. Biodiversity and Conservation, 19(2):563-574

Tajima F. 1989a. The effect of change in population size on DNA polymorphism. Genetics, 123(3):597-601

Tajima F. 1989b. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123(3):585-595

Tamura K, Stecher G, Peterson D, et al. 2013. MEGA6:molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 30(12):2725-2729

Thompson J D, Gibson T J, Plewniak F, et al. 1997. The CLUSTAL_X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Re-search, 25(24):4876-4882

Wang Zhongming, Kong Xiaoyu, Huang Liangmin, et al. 2014. Mor-phological and molecular evidence supports the occurrence of a single species of Zebrias zebrinus along the coastal waters of China. Acta Oceanologica Sinica, 33(8):44-54

Wimberger P H. 1992. Plasticity of fish body shape. The effects of diet, development, family and age in two species of Geophagus (Pisces:Cichlidae). Biological Journal of the Linnean Society, 45(3):197-218

Relative Articles

Supplements(0)

Cited By

Proportional views