Citation: | Jiying Pei, Yuxia Zhou, Shiguo Chen, Kefu Yu, Zhenjun Qin, Ruijie Zhang, Yitong Wang. Chemical diversity of scleractinian corals revealed by untargeted metabolomics and molecular networking[J]. Acta Oceanologica Sinica, 2023, 42(11): 127-135. doi: 10.1007/s13131-023-2173-y |
Brown B E, Bythell J C. 2005. Perspectives on mucus secretion in reef corals. Marine Ecology Progress Series, 296: 291–309. doi: 10.3354/meps296291
|
Chadwick N E. 1988. Competition and locomotion in a free-living fungiid coral. Journal of Experimental Marine Biology and Ecology, 123(3): 189–200. doi: 10.1016/0022-0981(88)90041-X
|
Darling E S, Alvarez-Filip L, Oliver T A, et al. 2012. Evaluating life-history strategies of reef corals from species traits. Ecology Letters, 15(12): 1378–1386. doi: 10.1111/j.1461-0248.2012.01861.x
|
d'Auriac I G, Quinn R A, Maughan H, et al. 2018. Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism. Proceedings of the Royal Society B: Biological Sciences, 285(1884): 20181307. doi: 10.1098/rspb.2018.1307
|
De Vos R C, Moco S, Lommen A, et al. 2007. Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nature Protocols, 2(4): 778–791. doi: 10.1038/nprot.2007.95
|
Dettmer K, Aronov P A, Hammock B D. 2007. Mass spectrometry-based metabolomics. Mass Spectrometry Reviews, 26(1): 51–78. doi: 10.1002/mas.20108
|
Drollet J H, Glaziou P, Martin P M V. 1993. A study of mucus from the solitary coral Fungia fungites (Scleractinia: Fungiidae) in relation to photobiological UV adaptation. Marine Biology, 115(2): 263–266. doi: 10.1007/BF00346343
|
Dudareva N. 2015. Aromatic amino acid network: biosynthesis, regulation and transport. The FASEB Journal, 29(S1): 103.2
|
Farag M A, Porzel A, Al-Hammady M A, et al. 2016. Soft corals biodiversity in the Egyptian Red Sea: a comparative MS and NMR metabolomics approach of wild and aquarium grown species. Journal of Proteome Research, 15(4): 1274–1287. doi: 10.1021/acs.jproteome.6b00002
|
Hadaidi G, Gegner H M, Ziegler M, et al. 2019. Carbohydrate composition of mucus from scleractinian corals from the central Red Sea. Coral Reefs, 38(1): 21–27. doi: 10.1007/s00338-018-01758-5
|
Han Minwei, Zhang Ruijie, Yu Kefu, et al. 2020. Polycyclic aromatic hydrocarbons (PAHs) in corals of the South China Sea: occurrence, distribution, bioaccumulation, and considerable role of coral mucus. Journal of Hazardous Materials, 384: 121299. doi: 10.1016/j.jhazmat.2019.121299
|
Hartmann A C, Petras D, Quinn R A, et al. 2017. Meta-mass shift chemical profiling of metabolomes from coral reefs. Proceedings of the National Academy of Sciences of the United States of America, 114(44): 11685–11690
|
Hayes J M, Abdul-Rahman N H, Gerdes M J, et al. 2021. Coral genus differentiation based on direct analysis in real time-high resolution mass spectrometry-derived chemical fingerprints. Analytical Chemistry, 93(46): 15306–15314. doi: 10.1021/acs.analchem.1c02519
|
He Qing, Sun Ruiqi, Liu Huijuan, et al. 2014. NMR-based metabolomic analysis of spatial variation in soft corals. Marine Drugs, 12(4): 1876–1890. doi: 10.3390/md12041876
|
Hou Dan, Lu Haiwen, Zhao Zhongyu, et al. 2022. Integrative transcriptomic and metabolomic data provide insights into gene networks associated with lignification in postharvest Lei bamboo shoots under low temperature. Food Chemistry, 368: 130822. doi: 10.1016/j.foodchem.2021.130822
|
Hughes T P, Kerry J T, Álvarez-Noriega M, et al. 2017. Global warming and recurrent mass bleaching of corals. Nature, 543(7645): 373–377. doi: 10.1038/nature21707
|
Imbs A B, Yakovleva I M. 2012. Dynamics of lipid and fatty acid composition of shallow-water corals under thermal stress: an experimental approach. Coral Reefs, 31(1): 41–53. doi: 10.1007/s00338-011-0817-4
|
Jones R N, Brush E G, Dilley E R, et al. 2021. Autumn coral bleaching in Hawai’i. Marine Ecology Progress Series, 675: 199–205. doi: 10.3354/meps13837
|
Karabulut A, McClain M, Rubinstein B, et al. 2022. The architecture and operating mechanism of a cnidarian stinging organelle. Nature Communications, 13(1): 3494. doi: 10.1038/s41467-022-31090-0
|
Kopp C, Domart-Coulon I, Escrig S, et al. 2015. Subcellular investigation of photosynthesis-driven carbon assimilation in the symbiotic reef coral Pocillopora damicornis. mBio, 6(1): e02299–14
|
Kusano M, Yang Zhigang, Okazaki Y, et al. 2015. Using metabolomic approaches to explore chemical diversity in rice. Molecular Plant, 8(1): 58–67. doi: 10.1016/j.molp.2014.11.010
|
Lynch J H, Dudareva N. 2020. Aromatic amino acids: a complex network ripe for future exploration. Trends in Plant Science, 25(7): 670–681. doi: 10.1016/j.tplants.2020.02.005
|
Maeda H, Dudareva N. 2012. The shikimate pathway and aromatic amino acid biosynthesis in plants. Annual Review of Plant Biology, 63: 73–105. doi: 10.1146/annurev-arplant-042811-105439
|
Marcelino V R, Morrow K M, van Oppen M J H, et al. 2017. Diversity and stability of coral endolithic microbial communities at a naturally high pCO2 reef. Molecular Ecology, 26(19): 5344–5357. doi: 10.1111/mec.14268
|
Metz T O, Zhang Qibin, Page J S, et al. 2007. Future of liquid chromatography-mass spectrometry in metabolic profiling and metabolomic studies for biomarker discovery. Biomarkers in Medicine, 1(1): 159–185. doi: 10.2217/17520363.1.1.159
|
Meunier V, Bonnet S, Pernice M, et al. 2019. Bleaching forces coral’s heterotrophy on diazotrophs and Synechococcus. The ISME Journal, 13(11): 2882–2886. doi: 10.1038/s41396-019-0456-2
|
Murphy J W A, Richmond R H. 2016. Changes to coral health and metabolic activity under oxygen deprivation. Peerj, 4: e1956. doi: 10.7717/peerj.1956
|
Oku H, Yamashiro H, Onaga K, et al. 2002. Lipid distribution in branching coral Montipora digitata. Fisheries Science, 68(3): 517–522. doi: 10.1046/j.1444-2906.2002.00456.x
|
Pei Jiying, Chen Shiguo, Yu Kefu, et al. 2022a. Metabolomics characterization of scleractinia corals with different life-history strategies: a case study about Pocillopora meandrina and Seriatopora hystrix in the South China Sea. Metabolites, 12(11): 1079. doi: 10.3390/metabo12111079
|
Pei Jiying, Yu Wenfeng, Zhang Jingjing, et al. 2022b. Mass spectrometry-based metabolomic signatures of coral bleaching under thermal stress. Analytical and Bioanalytical Chemistry, 414(26): 7635–7646. doi: 10.1007/s00216-022-04294-y
|
Qin Zhenjun, Yu Kefu, Chen Biao, et al. 2019. Diversity of Symbiodiniaceae in 15 coral species from the southern South China Sea: potential relationship with coral thermal adaptability. Frontiers in Microbiology, 10: 2343. doi: 10.3389/fmicb.2019.02343
|
Qin Zhenjun, Yu Kefu, Chen Shuchang, et al. 2021. Microbiome of juvenile corals in the outer reef slope and lagoon of the South China Sea: insight into coral acclimatization to extreme thermal environments. Environmental Microbiology, 23(8): 4389–4404. doi: 10.1111/1462-2920.15624
|
Qin Zhenjun, Yu Kefu, Liang Yanting, et al. 2020. Latitudinal variation in reef coral tissue thickness in the South China Sea: potential linkage with coral tolerance to environmental stress. Science of The Total Environment, 711: 134610. doi: 10.1016/j.scitotenv.2019.134610
|
Quévrain E, Domart-Coulon I, Bourguet-Kondracki M L. 2014. Marine natural products–chemical defense/chemical communication in sponges and corals. In: Osbourn A, Goss R J, Carter G T, eds. Natural Products: Discourse, Diversity, and Design. Hoboken: Wiley-Blackwell, 39–66
|
Roach T N F, Dilworth J, Christian M H, et al. 2021. Metabolomic signatures of coral bleaching history. Nature Ecology & Evolution, 5(4): 495–503
|
Rocha L A, Pinheiro H T, Shepherd B, et al. 2018. Mesophotic coral ecosystems are threatened and ecologically distinct from shallow water reefs. Science, 361(6399): 281–284. doi: 10.1126/science.aaq1614
|
Rosic N N, Dove S. 2011. Mycosporine-like amino acids from coral dinoflagellates. Applied and Environmental Microbiology, 77(24): 8478–8486. doi: 10.1128/AEM.05870-11
|
Schmidt C A, Daly N L, Wilson D T. 2019. Coral venom toxins. Frontiers in Ecology and Evolution, 7: 320. doi: 10.3389/fevo.2019.00320
|
Shinzato C, Shoguchi E, Kawashima T, et al. 2011. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature, 476(7360): 320–323. doi: 10.1038/nature10249
|
Sinniger F, Morita M, Harii S. 2013. “Locally extinct” coral species Seriatopora hystrix found at upper mesophotic depths in Okinawa. Coral Reefs, 32(1): 153. doi: 10.1007/s00338-012-0973-1
|
Sogin E M, Anderson P, Williams P, et al. 2014. Application of 1H-NMR metabolomic profiling for reef-building corals. PLoS One, 9(10): e111274. doi: 10.1371/journal.pone.0111274
|
Stabili L, Schirosi R, Licciano M, et al. 2014. Role of Myxicola infundibulum (Polychaeta, Annelida) mucus: from bacterial control to nutritional home site. Journal of Experimental Marine Biology and Ecology, 461: 344–349. doi: 10.1016/j.jembe.2014.09.005
|
Subbaraj A K, Huege J, Fraser K, et al. 2019. A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass. Communications Biology, 2: 87. doi: 10.1038/s42003-019-0289-6
|
Tang Fenfen, Hatzakis E. 2020. NMR-based analysis of pomegranate juice using untargeted metabolomics coupled with nested and quantitative approaches. Analytical Chemistry, 92(16): 11177–11185. doi: 10.1021/acs.analchem.0c01553
|
Tang Jia, Cai Wenqi, Yan Zhicong, et al. 2022. Interactive effects of acidification and copper exposure on the reproduction and metabolism of coral endosymbiont Cladocopium goreaui. Marine Pollution Bulletin, 177: 113508. doi: 10.1016/j.marpolbul.2022.113508
|
Vohsen S A, Fisher C R, Baums I B. 2019. Metabolomic richness and fingerprints of deep-sea coral species and populations. Metabolomics, 15(3): 34. doi: 10.1007/s11306-019-1500-y
|
Wang Mingxun, Carver J J, Phelan V V, et al. 2016. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nature Biotechnology, 34(8): 828–837. doi: 10.1038/nbt.3597
|
Williams A, Chiles E N, Conetta D, et al. 2021. Metabolomic shifts associated with heat stress in coral holobionts. Science Advances, 7(1): eabd4210. doi: 10.1126/sciadv.abd4210
|
Yamashiro H, Oku H, Onaga K. 2005. Effect of bleaching on lipid content and composition of Okinawan corals. Fisheries Science, 71(2): 448–453. doi: 10.1111/j.1444-2906.2005.00983.x
|
Yu Wanjun, Wang Wenhuan, Yu Kefu, et al. 2019. Rapid decline of a relatively high latitude coral assemblage at Weizhou Island, northern South China Sea. Biodiversity and Conservation, 28(14): 3925–3949. doi: 10.1007/s10531-019-01858-w
|
Zhao Xiaoyan, E Hengchao, Dong Hui, et al. 2022. Combination of untargeted metabolomics approach and molecular networking analysis to identify unique natural components in wild Morchella sp. by UPLC-Q-TOF-MS. Food Chemistry, 366: 130642. doi: 10.1016/j.foodchem.2021.130642
|