Genetic variation of the small yellow croaker (<i>Larimichthys</i> <i>polyactis</i>) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources

Jian Zheng; Tianxiang Gao; Yunrong Yan; Na Song

doi:10.1007/s13131-022-2039-8

Volume 41 Issue 11

Nov. 2022

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Jian Zheng, Tianxiang Gao, Yunrong Yan, Na Song. Genetic variation of the small yellow croaker (Larimichthys polyactis) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources[J]. Acta Oceanologica Sinica, 2022, 41(11): 88-95. doi: 10.1007/s13131-022-2039-8

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Jian Zheng, Tianxiang Gao, Yunrong Yan, Na Song. Genetic variation of the small yellow croaker (Larimichthys polyactis) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources[J]. Acta Oceanologica Sinica, 2022, 41(11): 88-95. doi: 10.1007/s13131-022-2039-8

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Genetic variation of the small yellow croaker (Larimichthys polyactis) inferred from mitochondrial DNA provides novel insight into the fluctuation of resources

doi: 10.1007/s13131-022-2039-8

1.
Key Laboratory of Mariculture of Ministry of Education, Ocean University of China, Qingdao 266003, China
2.
Fishery College, Zhejiang Ocean University, Zhoushan 316022, China
3.
College of Fisheries, Guangdong Ocean University, Zhanjiang 524088, China

Funds: The National Key Research and Development Program of China under contract No. 2018YFD0900905.

More Information

Corresponding author: E-mail: songna624@163.com
Received Date: 2021-12-15
Accepted Date: 2022-02-28

Available Online: 2022-10-08

Publish Date: 2022-11-01

Abstract

Abstract

The small yellow croaker (Larimichthys polyactis) belongs to the family Sciaenidae, which is an offshore warm fish species and widely distributed in the western Pacific. In this study, the variation of genetic diversity and genetic differentiation among L. polyactis populations was analyzed by mitochondrial DNA control region. A total of 110 polymorphic sites were checked, which defined 134 haplotypes. High level of haplotype diversity (h=0.993±0.002) was detected in the examined range. Population genetic structure analyse (analysis of molecular variance, F_st) showed there were high gene flow among L. polyactis populations. The result showed that there were relatively high genetic diversity and low genetic differentiation among the Yellow Sea and the East China Sea populations, which can be attributed to diverse habitats, wide distribution range and high mutation rate of control region. Using phylogenetic methods, coalescent analyses (neutrality tests, mismatch distribution analysis, Bayesian skyline analyses) and molecular dating interpreted in conjunction with paleoclimatic and physiographic evidence, we inferred that the genetic make-up of extant populations of L. polyactis was shaped by Pleistocene environmental impacts on the historical demography of this species. Besides, relatively constant genetic diversity and larger effective population size were detected in recent L. polyactis population. The result showed that the fishing policy certainly, such as the summer closed fishing, played a role in protecting resources of L. polyactis. This study can offer a wealth of biological novelties which indicates genetic structure of L. polyactis population and provides the foundation for resources protection and policy setting.
- Larimichthys polyactis,
- genetic diversity,
- genetic differentiation,
- mitochondrial DNA control region

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