Levels and patterns of genetic variation in <i>Pampus minor</i>: Assessment of a mitochondrial DNA control region sequence

Yuan Li; Liyan Zhang; Jing Zhang; Cheng Liu; Longshan Lin

doi:10.1007/s13131-021-1784-4

Volume 40 Issue 4

Jun. 2021

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Yuan Li, Liyan Zhang, Jing Zhang, Cheng Liu, Longshan Lin. Levels and patterns of genetic variation in Pampus minor: Assessment of a mitochondrial DNA control region sequence[J]. Acta Oceanologica Sinica, 2021, 40(4): 74-83. doi: 10.1007/s13131-021-1784-4

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Yuan Li, Liyan Zhang, Jing Zhang, Cheng Liu, Longshan Lin. Levels and patterns of genetic variation in Pampus minor: Assessment of a mitochondrial DNA control region sequence[J]. Acta Oceanologica Sinica, 2021, 40(4): 74-83. doi: 10.1007/s13131-021-1784-4

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Levels and patterns of genetic variation in Pampus minor: Assessment of a mitochondrial DNA control region sequence

doi: 10.1007/s13131-021-1784-4

Yuan Li^{1, #},
Liyan Zhang^{2, #},
Jing Zhang³,
Cheng Liu¹,
Longshan Lin^{1
,
,}

1.
Third Institute of Oceanography, Ministry of Natural Resources, Xiamen 361005, China
2.
Fujian Institute of Oceanography, Xiamen 361013, China
3.
Fisheries College, Jimei University, Xiamen 361021, China

Funds: The National Key Research and Development Program of China under contract No. 2018YFC1406302; the National Programme on Global Change and Air-Sea Interaction under contract No. GASI-02-SCS-YDsum; the Fond of Fujian Provincial Research Institutes of Basic Research and Public Service Special Operations under contract No. 2017R1006-5; the Fond of Bilateral Cooperation of Maritime Affairs under contract No. 2200207.

More Information

Corresponding author: Email: lshlin@tio.org.cn
Received Date: 2019-11-29
Accepted Date: 2020-04-27

Available Online: 2021-04-28

Publish Date: 2021-06-03

Abstract

Abstract

Pampus minor is an important commercial fish. Due to the similarity of external morphological characteristics among the genus Pampus species, P. minor has often been identified as the juvenile group of both P. cinereus and P. argenteus. While little genetic background on this species is known, this study was based on control region sequences and provided the first evaluation of the genetic signature of 264 individuals of P. minor from 11 populations along the coasts of China and Malaysia. The results indicate high genetic haplotype diversity and low nucleotide diversity in this species. Additionally, two differentiated haplotype lineages were identified in the P. minor populations. However, phylogenetic structures corresponding to the geographical locations were unable to be established. Analysis of molecular variance identified a vast majority of the genetic variation occurring within populations. F-statistic test value (F_ST) of pairwise indicated that great differences existed between the Chinese and Malaysian P. minor populations. For the Chinese populations, the genetic differences were insignificant with the exception of the Xiamen population, which is a marginal population. During the late Pleistocene, a population expansion of P. minor occurred. These expanded populations originated from the glacial refugium in the South China Sea and then rapidly occupied and adapted to their new habitat. The results of this study provide genetic information for ensuring the protection and management of P. minor resources.
- phylogeography,
- South China Sea,
- Pampus minor,
- genetic diversity,
- genetic differentiation

#These authors contributed equally to this work.

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References(47)

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