Citation: | Wei Gao, Xiangxing Gao, Tiezhu Mi, Bin Han, Yiran Zhang, Xinzi Li, Xiaofei Yin, Chengjun Sun, Qian Li, Zhisong Cui, Xiao Luan, Zhigang Yu, Li Zheng. Degradation potential and diversity of oil-degrading bacteria isolated from the sediments of the Jiaozhou Bay, China[J]. Acta Oceanologica Sinica, 2019, 38(6): 54-64. doi: 10.1007/s13131-019-1353-2 |
Amato K R, Yeoman C J, Kent A, et al. 2013. Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes. The ISME Journal, 7(7): 1344–1353. doi: 10.1038/ismej.2013.16
|
Atlas R M, Stoeckel D M, Faith S A, et al. 2015. Oil biodegradation and oil-degrading microbial populations in marsh sediments impacted by oil from the Deepwater horizon well blowout. Environmental Science and Technology, 49(14): 8356–8366. doi: 10.1021/acs.est.5b00413
|
Bacosa H P, Liu Z F, Erdner D L. 2015. Natural sunlight shapes crude oil-degrading bacterial communities in northern gulf of Mexico surface waters. Frontiers in Microbiology, 6: 1325
|
Balachandran C, Duraipandiyan V, Balakrishna K, et al. 2012. Petroleum and polycyclic aromatic hydrocarbons (PAHs) degradation and naphthalene metabolism in Streptomyces sp. (ERI-CPDA-1) isolated from oil contaminated soil. Bioresource Technology, 112: 83–90. doi: 10.1016/j.biortech.2012.02.059
|
Boopathy R. 2000. Factors limiting bioremediation technologies. Bioresource Technology, 74(1): 63–67. doi: 10.1016/S0960-8524(99)00144-3
|
Cai Minmin, Yao Jun, Yang Huaijun, et al. 2013. Aerobic biodegradation process of petroleum and pathway of main compounds in water flooding well of Dagang oil field. Bioresource Technology, 144: 100–106. doi: 10.1016/j.biortech.2013.06.082
|
Chronopoulou P M, Sanni G O, Silas-Olu D I, et al. 2015. Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea. Microbial Biotechnology, 8(3): 434–447. doi: 10.1111/mbt2.2015.8.issue-3
|
Cui Zhisong, Lai Qiliang, Dong Chunming, et al. 2008. Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic ridge. Environmental Microbiology, 10(8): 2138–2149. doi: 10.1111/emi.2008.10.issue-8
|
Dubinsky E A, Conrad M E, Chakraborty R, et al. 2013. Succession of hydrocarbon-degrading bacteria in the aftermath of the Deepwater horizon oil spill in the Gulf of Mexico. Environmental Science and Technology, 47(19): 10860–10867. doi: 10.1021/es401676y
|
Dyksterhouse S E, Gray J P, Herwig R P, et al. 1995. Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments. International Journal of Systematic Bacteriology, 45(1): 116–123. doi: 10.1099/00207713-45-1-116
|
Fingas M. 2012. The Basics of Oil Spill Cleanup. 3rd ed. Boca Raton, FL: CRC Press
|
Gao Xiangxing, Gao Wei, Cui Zhisong, et al. 2015. Biodiversity and degradation potential of oil-degrading bacteria isolated from deep-sea sediments of South Mid-Atlantic Ridge. Marine Pollution Bulletin, 97(1–2): 373–380
|
Hassanshahian M, Emtiazi G, Cappello S. 2012. Isolation and characterization of crude-oil-degrading bacteria from the Persian Gulf and the Caspian Sea. Marine Pollution Bulletin, 64(1): 7–12. doi: 10.1016/j.marpolbul.2011.11.006
|
Hazen T C, Dubinsky E A, DeSantis T Z, et al. 2010. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science, 330(6001): 204–208. doi: 10.1126/science.1195979
|
Hazen T C, Prince R C, Mahmoudi N. 2016. Marine oil biodegradation. Environmental Science and Technology, 50(5): 2121–2129. doi: 10.1021/acs.est.5b03333
|
King G M, Kostka J E, Hazen T C, et al. 2015. Microbial responses to the Deepwater horizon oil spill: From coastal wetlands to the deep sea. Annual Review of Marine Science, 7(1): 377–401. doi: 10.1146/annurev-marine-010814-015543
|
Kleindienst S, Paul J H, Joye S B. 2015. Using dispersants after oil spills: impacts on the composition and activity of microbial communities. Nature Reviews Microbiology, 13(6): 388–396. doi: 10.1038/nrmicro3452
|
Kostka J E, Prakash O, Overholt W A, et al. 2011. Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the Deepwater horizon oil spill. Applied and Environmental Microbiology, 77(22): 7962–7974. doi: 10.1128/AEM.05402-11
|
Lai Qiliang, Liu Yang, Yuan Jun, et al. 2014. Multilocus sequence analysis for assessment of phylogenetic diversity and biogeography in Thalassospira bacteria from diverse marine environments. PLoS One, 9(9): e106353. doi: 10.1371/journal.pone.0106353
|
Liu Yang, Lai Qiliang, Shao Zongze. 2017. A multilocus sequence analysis scheme for phylogeny of Thioclava bacteria and proposal of two novel species. Frontiers in Microbiology, 8: 1321. doi: 10.3389/fmicb.2017.01321
|
Liu Chenli, Wu Yehui, Li Li, et al. 2007. Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov. International Journal of Systematic and Evolutionary Microbiology, 57(2): 316–320. doi: 10.1099/ijs.0.64544-0
|
Mason O U, Han J, Woyke T, et al. 2014. Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater horizon oil spill. Frontiers in Microbiology, 5(2): 332
|
Mishamandani S, Gutierrez T, Berry D, et al. 2016. Response of the bacterial community associated with a cosmopolitan marine diatom to crude oil shows a preference for the biodegradation of aromatic hydrocarbons. Environmental Microbiology, 18(6): 1817–1833. doi: 10.1111/1462-2920.12988
|
Mortazavi B, Horel A, Anders J S, et al. 2013. Enhancing the biodegradation of oil in sandy sediments with choline: A naturally methylated nitrogen compound. Environmental Pollution, 182: 53–62. doi: 10.1016/j.envpol.2013.06.022
|
Rochelle P A. 2001. Environmental Molecular Microbiology: Protocols and Applications. Norfolk, England: Horizon Scientific Press
|
Ruberto L, Vazquez S C, Mac Cormack W P. 2003. Effectiveness of the natural bacterial flora, biostimulation and bioaugmentation on the bioremediation of a hydrocarbon contaminated Antarctic soil. International Biodeterioration and Biodegradation, 52(2): 115–125. doi: 10.1016/S0964-8305(03)00048-9
|
Samanta S K, Singh O V, Jain R K. 2002. Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. Trends in Biotechnology, 20(6): 243–248. doi: 10.1016/S0167-7799(02)01943-1
|
Schloss P D, Gevers D, Westcott S L. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One, 6: e27310. doi: 10.1371/journal.pone.0027310
|
Shao Zongze, Cui Zhisong, Dong Chunming, et al. 2010. Analysis of a PAH-degrading bacterial population in subsurface sediments on the Mid-Atlantic Ridge. Deep-Sea Research Part I Oceanographic Research Papers, 57(5): 724–730. doi: 10.1016/j.dsr.2010.02.001
|
Simons K L, Sheppard P J, Adetutu E M, et al. 2013. Carrier mounted bacterial consortium facilitates oil remediation in the marine environment. Bioresource Technology, 134: 107–116. doi: 10.1016/j.biortech.2013.01.152
|
Stackebrandt E, Ebers J. 2006. Taxonomic parameters revisited: tarnished gold standards. Microbiology Today, 33(4): 152–155
|
Thomas J C, Wafula D, Chauhan A, et al. 2014. A survey of Deepwater horizon (DWH) oil-degrading bacteria from the Eastern oyster biome and its surrounding environment. Frontiers in Microbiology, 5(4): 149
|
Wang Wanpeng, Zhong Rongqiu, Shan Dapeng, et al. 2014. Indigenous oil-degrading bacteria in crude oil-contaminated seawater of the Yellow sea, China. Applied Microbiology and Biotechnology, 98(16): 7253–7269. doi: 10.1007/s00253-014-5817-1
|
Zheng Li, Cui Zhisong, Gao Wei, et al. 2012. Field study of the bioremediation of oil-contaminated Dalian beach by marine oil-degrading bacterial agent. Haiyang Xuebao (in Chinese), 34(3): 163–172
|