Citation: | LI Xiangfu, XU Jie, SHI Zhen, LI Qian, LI Ruihuan. Variability in the empirical leucine-to-carbon conversion factors along an environmental gradient[J]. Acta Oceanologica Sinica, 2018, 37(4): 77-82. doi: 10.1007/s13131-018-1144-1 |
Agusti S, Duarte C M, Vaque D, et al. 2001. Food-web structure and elemental (C, N and P) fluxes in the eastern tropical North Atlantic. Deep-Sea Research Part Ⅱ, 48: 2295-2321
|
Alonso-Sáez L, Gasol J M, Arístegui J, et al. 2007. Large-scale variability in surface bacterial carbon demand and growth efficiency in the subtropical northeast Atlantic Ocean. Limnology and Oceanography, 52(2): 533-546
|
Alonso-Sáez L, Pinhassi J, Pernthaler J, et al. 2010. Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence?.. Environmental Microbiology, 12(11): 2988-2997
|
Baptista I, Santos A L, Cunha Â, et al. 2011. Bacterial biomass production in an estuarine system: high variability of leucine conversion factors and changes in bacterial community structure during incubation. Aquatic Microbial Ecology, 62(3): 299-310
|
Carlson C A, del Giorgio P A, Herndl G J. 2007. Microbes and the dissipation of energy and respiration: from cells to ecosystems. Oceanography, 20(2): 89-100
|
Dai Minghan, Guo Xianghui, Zhai Weidong, et al. 2006. Oxygen depletion in the upper reach of the Pearl River estuary during a winter drought. Marine Chemistry, 102(1–2): 159-169
|
Dai Minghan, Zhai Weidong, Cai Weijun, et al. 2008. Effects of an estuarine plume-associated bloom on the carbonate system in the lower reaches of the Pearl River estuary and the coastal zone of the northern South China Sea. Continental Shelf Research, 28(12): 1416-1423
|
del Giorgio P A, Condon R, Bouvier T, et al. 2011. Coherent patterns in bacterial growth, growth efficiency, and leucine metabolism along a northeastern Pacific inshore-offshore transect. Limnology and Oceanography, 56(1): 1-16
|
Ducklow H W, Kirchman D L, Quinby H L. 1992. Bacterioplankton cell growth and macromolecular synthesis in seawater cultures during the North Atlantic Spring Phytoplankton Bloom, May, 1989. Microbial Ecology, 24(2): 125-144
|
Franco-Vidal L, Morán X A G. 2011. Relationships between coastal bacterioplankton growth rates and biomass production: comparison of leucine and thymidine uptake with single-cell physiological characteristics. Microbial Ecology, 61(2): 328-341
|
Fuhrman J A, Azam F. 1980. Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California. Applied and Environmental Microbiology, 39(6): 1085-1095
|
Fuhrman J. 1992. Bacterioplankton roles in cycling of organic matter: the microbial food web. In: Falkowski P G, Woodhead A D, Vivirito K, eds. Primary Productivity and Biogeochemical Cycles in the Sea. New York: Plenum, 361–383
|
Grasshoff K, Kremling K, Ehrhardt M. 1999. Methods of Seawater Analysis. 3rd ed. Weinheim: WILEY-VCH Verlag GmbH, 159–226
|
He Biyan, Dai Minghan, Zhai Weidong, et al. 2010. Distribution, degradation and dynamics of dissolved organic carbon and its major compound classes in the Pearl River estuary, China. Marine Chemistry, 119(1–4): 52-64
|
Kirchman D, K’Nees E, Hodson R. 1985. Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems. Applied and Environmental Microbiology, 49(3): 599-607
|
Kirchman D L, Ducklow H W. 1993. Estimating conversion factors for the thymidine and leucine methods for measuring bacterial production. In: Kemp P F, Sherr B F, Sherr E B, et al., eds. Handbook of Methods in Aquatic Microbial Ecology. Boca Raton, FL: Lewis Publishing, 513–517
|
Knap A H, Michaels A, Close A R, et al. 1996. Protocols for the joint global ocean flux study (JGOFS) core measurements. JGOFS Report NO. 19. Reprint of the IOC Manuals and Guides No. 29. Paris: UNESCO
|
Lee S, Fuhrman J A. 1987. Relationships between biovolume and biomass of naturally derived marine bacterioplankton. Applied and Environmental Microbiology, 53(6): 1298-1303
|
Li Q P, Hansell D A. 2008. Nutrient distributions in baroclinic eddies of the oligotrophic North Atlantic and inferred impacts on biology. Deep Sea Research Part Ⅱ: Topical Studies in Oceanography, 55(10): 1291-1299
|
Li Q P, Hansell D A, Zhang J Z. 2008. Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater. Limnology and Oceanography: Methods, 6(7): 319-326
|
Mandelstam J. 1958. Turnover of protein in growing and non-growing populations of Escherichia coli. Biochemical Journal, 69(1): 110-119
|
Marie D, Partensky F, Jacquet S, et al. 1997. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR Green I. Applied and Environmental Microbiology, 63(1): 186-193
|
McManus G B, Fuhrman J A. 1988. Control of marine bacterioplankton populations: measurement and significance of grazing. Hydrobiologia, 159(1): 51-62
|
Morán X A G, Fernández E, Pérez V. 2004. Size-fractionated primary production, bacterial production and net community production in subtropical and tropical domains of the oligotrophic NE Atlantic in autumn. Marine Ecology Progress Series, 274: 17-29
|
Parsons T R, Maita Y, Lalli C M. 1984. A Manual of Chemical and Biological Methods for Seawater Analysis. Oxford: Pergamum Press
|
Pulido-Villena E, Reche I. 2003. Exploring bacterioplankton growth and protein synthesis to determine conversion factors across a gradient of dissolved organic matter. Microbial Ecology, 46(1): 33-42
|
Servais P. 1990. Estimation of bacterial production in marine ecosystems from the measurement of the protein-synthesis rate. Oceanologic Acta (in French), 13(8): 229-235
|
Simon M, Azam F. 1989. Protein content and protein synthesis rates of planktonic marine bacteria. Marine Ecology Progress Series, 51(3): 201-213
|
Smith D C, Azam F. 1992. A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H-leucine. Marine Microbial Food Webs, 6(2): 107-114
|
Teira E, Hernando-Morales V, Cornejo-Castillo F M, et al. 2015. Sample dilution and bacterial community composition influence empirical leucine-to-carbon conversion factors in surface waters of the world’s oceans. Applied and Environmental Microbiology, 81(23): 8224-8232
|
Xu Jie, Jing Hongmei, Sun Mingming, et al. 2013. Regulation of bacterial metabolic activity by dissolved organic carbon and viruses. Journal of Geophysical Reseach: Biogeosciences, 118(4): 1573-1583
|
Xu Jie, Yin Kedong, He Lei, et al. 2008. Phosphorus limitation in the northern South China Sea during late summer: influence of the Pearl River. Deep Sea Research Part I: Oceanographic Research Papers, 55(10): 1330-1342
|
Yin Kedong, Qian Peiyuan, Wu M C S, et al. 2001. Shift from P to N limitation of phytoplankton growth across the Pearl River estuarine plume during summer. Marine Ecology Progess Series, 221: 17-28
|