Citation: | DONG Zhongdian, QI Qian, ZHANG Ning, SHAO Changwei, ZHANG Liyan, WEN Haishen, CHEN Songlin. Molecular characterization and expression analysis of Patched 1 gene in the half-smooth tongue sole (Cynoglossus semilaevis)[J]. Acta Oceanologica Sinica, 2016, 35(6): 19-28. doi: 10.1007/s13131-016-0865-2 |
Alcedo J, Ayzenzon M, Von Ohlen T, et al. 1996. The Drosophila smoothened gene encodes a seven-pass membrane protein, a putative receptor for the hedgehog signal. Cell, 86(2): 221-232
|
Barsoum I B, Bingham N C, Parker K L, et al. 2009. Activation of the Hedgehog pathway in the mouse fetal ovary leads to ectopic appearance of fetal Leydig cells and female pseudohermaph-roditism. Developmental Biology, 329(1): 96-103
|
Beaudoing E, Freier S, Wyatt J R, et al. 2000. Patterns of variant poly-adenylation signal usage in human genes. Genome Research, 10(7): 1001-1010
|
Bellvé A R, Millette C F, Bhatnagar Y M, et al. 1977. Dissociation of the mouse testis and characterization of isolated spermatogenic cells. Journal of Histochemistry & Cytochemistry, 25(7): 480-494
|
Bitgood M J, McMahon A P. 1995. Hedgehog and Bmp genes are coex-pressed at many diverse sites of cell-cell interaction in the mouse embryo. Developmental Biology, 172(1): 126-138
|
Bitgood M J, Shen Liya, McMahon A P. 1996. Sertoli cell signaling by Desert hedgehog regulates the male germline. Current Biology, 6(3): 298-304
|
Canto P, S.derlund D, Reyes E, et al. 2004. Mutations in the desert hedgehog (DHH) gene in patients with 46, XY complete pure gonadal dysgenesis. The Journal of Clinical Endocrinology & Metabolism, 89(9): 4480-4483
|
Canto P, Vilchis F, S.derlund D, et al. 2005. A heterozygous mutation in the desert hedgehog gene in patients with mixed gonadal dys-genesis. Molecular Human Reproduction, 11(11): 833-836
|
Carpenter D, Stone D M, Brush J, et al. 1998. Characterization of two patched receptors for the vertebrate hedgehog protein family. Proceedings of the National Academy of Sciences of the United States of America, 95(23): 13630-13634
|
Carstea E D, Morris J A, Coleman K G, et al. 1997. Niemann-Pick C1 disease gene: homology to mediators of cholesterol homeostas-is. Science, 277(5323): 228-231
|
Chen Songlin, Ji Xiangshan, Shao Changwei, et al. 2012. Induction of mitogynogenetic diploids and identification of WW super-fe-male using sex-specific SSR markers in half-smooth tongue sole (Cynoglossus semilaevis). Marine Biotechnology, 14(1): 120-128
|
Chen Yongbin, Jiang Jin. 2013. Decoding the phosphorylation code in Hedgehog signal transduction. Cell Research, 23(2): 186-200
|
Chen Songlin, Li Jing, Deng Siping, et al. 2007. Isolation of female-specific AFLP markers and molecular identification of genetic sex in half-smooth tongue sole (Cynoglossus semilaevis). Mar-ine Biotechnology, 9(2): 273-280
|
Chen Yu, Struhl G. 1996. Dual roles for patched in sequestering and transducing Hedgehog. Cell, 87(3): 553-563
|
Chen Songlin, Zhang Guojie, Shao Changwei, et al. 2014. Whole-gen-ome sequence of a flatfish provides insights into ZW sex chro-mosome evolution and adaptation to a benthic lifestyle. Nature Genetics, 46(3): 253-260
|
Clark A M, Garland K K, Russell L D. 2000. Desert hedgehog (Dhh) gene is required in the mouse testis for formation of adult-type Leydig cells and normal development of peritubular cells and seminiferous tubules. Biology of Reproduction, 63(6): 1825-1838
|
Concordet J P, Lewis K E, Moore J W, et al. 1996. Spatial regulation of a zebrafish patched homologue reflects the roles of sonic hedgehog and protein kinase A in neural tube and somite pat-terning. Development, 122(9): 2835-2846
|
Daugela L, Nüsgen N, Walier M, et al. 2012. Measurements of DNA methylation at seven loci in various tissues of CD1 mice. PLoS One, 7(9): e44585
|
De Sousa P A, Caveney A, Westhusin M, et al. 1998a. Temporal pat-terns of embryonic gene expression and their dependence on oogenetic factors. Theriogenology, 49(1): 115-128
|
De Sousa P A, Watson A J, Schultz G A, et al. 1998b. Oogenetic and zy-gotic gene expression directing early bovine embryogenesis: a review. Molecular Reproduction and Development, 51(1): 112-121
|
Deng Siping, Chen Songion, Liu Benwei, et al. 2008. Molecular Clon-ing and Expression Analysis of FTZ-F1 in the Half-smooth Tongue-sole, Cynoglossus semilaevis. Zoological Research (in Chinese), 29(6): 592-598
|
Deng Siping, Chen Songlin, Tian Yongsheng, et al. 2007. Gonadal dif-ferentiation and effects of temperature on sex determination in half-smooth tongue-sole, Cynoglossus semilaevis. Journal of Fishery Sciences of China (in Chinese), 14(5): 714-719
|
Deng Siping, Chen Songlin, Xu Jianyong, et al. 2009. Molecular clon-ing, characterization and expression analysis of gonadal P450 aromatase in the half-smooth tongue-sole, Cynoglossus sem-ilaevis. Aquaculture, 287(1-2): 211-218
|
Dong Xiaoli, Chen Songlin, Ji Xiangshan, et al. 2011. Molecular clon-ing, characterization and expression analysis of Sox9a and Foxl2 genes in half-smooth tongue sole (Cynoglossussem-ilaevis). Acta Oceanologica Sinica, 30(1): 68-77
|
Hammerschmidt M, Brook A, McMahon A P. 1997. The world accord-ing to hedgebog. Trends in Genetics, 13(1): 14-21
|
Hu Qiaomu, Chen Songlin. 2013. Cloning, genomic structure and ex-pression analysis of ubc9 in the course of development in the half-smooth tongue sole (Cynoglossus semilaevis). Comparat-ive Biochemistry and Physiology Part B: Biochemistry and Mo-lecular Biology, 165(3): 181-188
|
Huang C C J, Yao H H C. 2010. Diverse functions of Hedgehog signal-ing in formation and physiology of steroidogenic organs. Mo-lecular Reproduction and Development, 77(6): 489-496
|
Huangfu D, Anderson K V. 2006. Signaling from Smo to Ci/Gli: con-servation and divergence of Hedgehog pathways from Droso-phila to vertebrates. Development, 133(1): 3-14
|
Ingham P W, McMahon A P. 2001. Hedgehog signaling in animal de-velopment: paradigms and principles. Genes & Development, 15(23): 3059-3087
|
Jacob L, Lum L. 2007. Hedgehog signaling pathway in Drosophila. Science's STKE, 2007(407): cm7
|
Jiang Yanwei, Wan Ruijing, Chen Ruisheng, et al. 1993. Studies on technique of artificial fry rearing of Cynoglossus semilaevis Günther in Bohai Sea. Marine Fisheries Research (in Chinese), (14): 25-33
|
Johnson M, Zaretskaya I, Raytselis Y, et al. 2008. NCBI BLAST: a bet-ter web interface. Nucleic Acids Research, 36(S2): W5-W9
|
Kamisago M, Kimura M, Furutani Y, et al. 1999. Assignment1 of hu-man desert hedgehog gene (DHH) to chromosome band 12q13. 1 by in situ hybridization. Cytogenetic and Genome Research, 87(1-2): 117-118
|
Koebernick K, Hollemann T, Pieler T. 2001. Molecular cloning and expression analysis of the Hedgehog receptors XPtc1 and XSmo in Xenopus laevis. Mechanisms of Development, 100(2): 303-308
|
Kumar S, Balczarek K A, Lai Zhichun. 1996. Evolution of the hedge-hog gene family. Genetics, 142(3): 965-972
|
Lewis K, Concordet J P, Ingham P W. 1999. Characterisation of a Second patched Gene in the Zebrafish Danio rerio and the Dif-ferential Response of patched Genes to Hedgehog Signalling. Developmental Biology, 208(1): 14-29
|
Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods, 25(4): 402-408
|
Loftus S K, Morris J A, Carstea E D, et al. 1997. Murine model of Niemann-Pick C disease: mutation in a cholesterol homeostas-is gene. Science, 277(5323): 232-235
|
Ma Xuekun, Liu Xuezhou, Wen Haishen, et al. 2006. Histological ob-servation on gonadal sex differentiation in Cynoglossus sem-ilaevis Günther. Marine Fisheries Research (in Chinese), 27(2): 55-61
|
Marigo V, Davey R A, Zuo Yi, et al. 1996. Biochemical evidence that patched is the Hedgehog receptor. Nature, 384(6605): 176-179
|
Nüsslein-Volhard C, Wieschaus E. 1980. Mutations affecting segment number and polarity in Drosophila. Nature, 287(5785): 795-801
|
O'Hara W A, Azar W J, Behringer R R, et al. 2011. Desert hedgehog is a mammal-specific gene expressed during testicular and ovarian development in a marsupial. BMC Developmental Biology, 11(1): 72
|
Park S Y, Meeks J J, Raverot G, et al. 2005. Nuclear receptors Sf1 and Dax1 function cooperatively to mediate somatic cell differenti-ation during testis development. Development, 132(10): 2415-2423
|
Petersen T N, Brunak S, von Heijne G, et al. 2011. SignalP 4.0: dis-criminating signal peptides from transmembrane regions. Nature Methods, 8(10): 785-786
|
Rahnama F, Toftgard R, Zaphiropoulos P G. 2004. Distinct roles of PTCH2 splice variants in Hedgehog signalling. Biochemical Journal, 378(2): 325-334
|
Russell M C, Cowan R G, Harman R M, et al. 2007. The hedgehog sig-naling pathway in the mouse ovary. Biology of Reproduction, 77(2): 226-236
|
Shao Changwei, Chen Songlin, Scheuring C F, et al. 2010. Construc-tion of two BAC libraries from half-smooth tongue sole Cyno-glossus semilaevis and identification of clones containing can-didate sex-determination genes. Marine Biotechnology, 12(5): 558-568
|
Shao Changwei, Li Qiye, Chen Songlin, et al. 2014. Epigenetic modi-fication and inheritance in sexual reversal of fish. Genome Re-search, 24(4): 604-615
|
Shao Jianguo, Zhang Ling, Gao Jun, et al. 2006. Aberrant expression of PTCH (patched gene) and Smo (smoothened gene) in hu-man pancreatic cancerous tissues and its association with hy-perglycemia. Pancreas, 33(1): 38-44
|
Sievers F, Higgins D G. 2014. Clustal Omega, accurate alignment of very large numbers of sequences. Multiple Sequence Align-ment Methods, 1079: 105-116
|
Smyth I, Narang M A, Evans T, et al. 1999. Isolation and characteriza-tion of human patched 2 (PTCH2), a putative tumour suppress-or gene in basal cell carcinoma and medulloblastoma on chro-mosome 1p32. Human Molecular Genetics, 8(2): 291-297
|
Song Wentao, Li Yangzhen, Zhao Yongwei, et al. 2012. Construction of a high-density microsatellite genetic linkage map and map-ping of sexual and growth-related traits in half-smooth tongue sole (Cynoglossus semilaevis). PLoS One, 7(12): e52097
|
Stone D M, Hynes M, Armanini M, et al. 1996. The tumour-suppress-or gene patched encodes a candidate receptor for Sonic hedge-hog. Nature, 384(6605): 129-134
|
Suzuki M M, Bird A. 2008. DNA methylation landscapes: provocative insights from epigenomics. Nature Reviews Genetics, 9(6): 465-476
|
Szczepny A, Hime G R, Loveland K L. 2006. Expression of hedgehog signalling components in adult mouse testis. Developmental Dynamics, 235(11): 3063-3070
|
Takabatake T, Takahashi T C, Takabatake Y, et al. 2000. Distinct ex-pression of two types of Xenopus Patched genes during early embryogenesis and hindlimb development. Mechanisms of Development, 98(1-2): 99-104
|
Tamura K, Peterson D, Peterson N, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evol-utionary distance, and maximum parsimony methods. Molecu-lar Biology and Evolution, 28(10): 2731-2739
|
Umehara F, Tate G, Itoh K, et al. 2000. A Novel mutation of desert hedgehog in a patient with 46, XY partial gonadal dysgenesis ac-companied by minifascicular neuropathy. The American Journal of Human Genetics, 67(5): 1302-1305
|
Varjosalo M, Taipale J. 2008. Hedgehog: functions and mechanisms. Genes & Development, 22(18): 2454-2472
|
Watson A J, Watson P H, Arcellana-Panlilio M, et al. 1994. A growth factor phenotype map for ovine preimplantation development. Biology of Reproduction, 50(4): 725-733
|
Wijgerde M, Ooms M, Hoogerbrugge J W. et al. 2005. Hedgehog sig-naling in mouse ovary: indian hedgehog and desert hedgehog from granulosa cells induce target gene expression in develop-ing theca cells. Endocrinology, 146(8): 3558-3566
|
Wong K Y, Huang Xiaojun, Chim C S. 2012. DNA methylation of mi-croRNA genes in multiple myeloma. Carcinogenesis, 33(9): 1629-1638
|
Yao H H C, Whoriskey W, Capel B. 2002. Desert Hedgehog/Patched 1 signaling specifies fetal Leydig cell fate in testis organogenesis. Genes & Development, 16(11): 1433-1440
|
Zhang Liyan, Liu Wanjun, Shao Changwei, et al. 2014. Cloning, ex-pression and methylation analysis of piwil2 in half-smooth tongue sole (Cynoglossus semilaevis). Marine Genomics, 18: 45-54
|